1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGCATGGGAATCACCGAAGCATTGCGGCTGCAAATGGAAGTTCAAAAGCAGCTCCACGAACAACTTGAGgtgtgcatttgatagatagaatgccttatttaatttatcaggtcatttatgtcttaattttgcagatattttgctggttagtccaataaatatgcttttg...
species | Vitis vinifera |
transcript | Vv14s0036g01380.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CATTGCGGCTGCAAATGGAAGTTCAAAAGCAGCTCCACGAACAACTTGAG ATTCAGAGAAATTTGCAGTTGCGAATTGAAGAGCAGGCAAAGCACCTTCAAEST: gi|110365809|gb|EC929276.1|EC929276
genomic: CATTGCGGCTGCAAATGGAAGTTCAAAAGCAGCTCCACGAACAACTTGAGgtgtgcattt ... tttcatgcagATTCAGAGAAATTTGCAGTTGCGAATTGAAGAGCAGGCAAAGCACCTTCAA
EST: GAACAACTTGAG ATTCAGAGAAATTTGCAGTTGCGAATTGAAGAGCAGGCAAAGCACCTTCAA
genomic: GAACAACTTGAGgtgtgcattt ... tttcatgcagATTCAGAGAAATTTGCAGTTGCGAATTGAAGAGCAGGCAAAGCACCTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCATGGGAATCACCGAAGCATTGCGGCTGCAAATGGAAGTTCAAAAGCAGCTCCACGAACAACTTGAGgtgtgcatttgatagatagaatgccttatttaatttatcaggtcatttatgtcttaattttgcagatattttgctggttagtccaataaatatgcttttg
- - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa