Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCATCACATTCCAGGCCCAGAGGGTGTGCGTGGTCGTAACTCAGACAACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatataacaagacaccgcttgccttattacgaggtttttttaacttatgatttggattatgcaatgggtcagtcttacaagccaagtgtatatgt...

Basic information

species Vitis vinifera
transcript Vv14s0030g02180.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g02180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os11g37890.3 (Oryza sativa), 5'ss of exon 5
CATCCATCACATTCCAGGCCCAGAGGGTGTGCGTGGTCGTAACTCAGACAACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatataac--------aagacaccgcttgccttattacgaggtttttttaacttatg-atttggattatgcaatggg----tcagtcttacaagccaagtgtatatgt
|||||| ||||| || || ||||||||||| |||||||| ||||| |||||||| || |||||||||||||| || ||||||||||| ||||   ||||||||||  |||  |        | |  |||   |||||                 || | ||| |||  ||| || ||  ||     | | |||| |    ||           
CATCCACCACATCCCCGGGCCAGAGGGTGTCCGTGGTCGCAACTCCGACAACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactatccctgattttcaggcaaccatctgcctatcagttcatcgccccgaattcatgcattctgatcattcatcggaaacttgattcttgcggcgcag----------

upper sequence: Vv14s0030g02180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 6
CATCCATCACATTCCAGGCCCAGAGGGTGTGCGTGGTCGTAACTCAGACAACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtactt-atataacaagacac---cgcttgccttattac--gaggtttttttaacttatg-atttggattatgcaatgggtcagtcttacaagccaagtgtatatgt
|||||| ||||| || || || ||||| |||||||| || |||||||||||||| || ||||| |||||||| || |||||||| || ||||   ||||||||||  |   |||    |||   |  | ||   | | |  ||| |   |   || ||   | |  |||  | || ||     | ||  |||     |  |  |   
CATCCACCACATCCCCGGGCCGGAGGGCGTGCGTGGGCGCAACTCAGACAACACGCTCATCAAGGAGAAGCTTGGCTGGGCTCCGACTATGAGGCTGAAGgtactccaccaaacctcgcacgtaccatcgctccagtccctgagctggatcacacctacatagtctgatcgttcattgcactggact--caaatttggcctgcag--

upper sequence: Vv14s0030g02180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ12864 (Selaginella moellendorffii), 5'ss of exon 5
CATCCATCACATTCCAGGCCCAGAGGGTGTGCGTGGTCGTAACTCAGACAACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatataacaagacaccgcttgccttattacgaggtttttttaacttatgatttggattatgcaatgggtcagtcttacaa-gccaagtgtatatgt
 ||||| || || || || ||||| ||||| |||||| | || || |||||||  ||||| || ||||||||||||||||| |||||||||  | | |||||         | || ||     ||   ||||| |    ||  | |  ||  || |||| |    | |       |   | | |  |    |||| ||   
AATCCACCATATCCCTGGGCCAGAAGGTGTTCGTGGTAGAAATTCGGACAACAATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtg--------aaaaaacgagtttttatttatttc----ttcctctctctcctgttttgca----gaagcaaactaacgtgagattgtgtggtgtgtag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83277236|gb|DV941244.1|DV941244
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|18458534|gb|BM436812.1|BM436812
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGA
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGA
EST: gi|77586516|gb|DV222374.1|DV222374
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|33403428|gb|CF209055.1|CF209055
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|71871565|gb|DT020620.1|DT020620
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34546402|gb|CF514634.1|CF514634
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|352795293|gb|FQ476408.1|FQ476408
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAGG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110694249|gb|EE071200.1|EE071200
EST:     CTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: CTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110363526|gb|EC927120.1|EC927120
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|352787099|gb|FQ476326.1|FQ476326
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAGG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|56409453|gb|CX017705.1|CX017705
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34362801|gb|CF404386.1|CF404386
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|33405332|gb|CF210959.1|CF210959
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34546486|gb|CF514718.1|CF514718
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|83275637|gb|DV939645.1|DV939645
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|30305414|gb|CB982208.1|CB982208
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|33405246|gb|CF210873.1|CF210873
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110363770|gb|EC927384.1|EC927384
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110426688|gb|EC993106.1|EC993106
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110413949|gb|EC979768.1|EC979768
EST:     GAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: GAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110424690|gb|EC991058.1|EC991058
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110703921|gb|EE081281.1|EE081281
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110371108|gb|EC934874.1|EC934874
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110361073|gb|EC924526.1|EC924526
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110380742|gb|EC946032.1|EC946032
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|352778444|gb|FQ465754.1|FQ465754
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110687500|gb|EE064980.1|EE064980
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110732270|gb|EE107411.1|EE107411
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|71890477|gb|DT039532.1|DT039532
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34542876|gb|CF511108.1|CF511108
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110426363|gb|EC992769.1|EC992769
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110419490|gb|EC985722.1|EC985722
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34542792|gb|CF511024.1|CF511024
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110698029|gb|EE075575.1|EE075575
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTTGGATCAAGGAACAGATTGAGAAAGA
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCT-GGATCAAGGAACAGATTGAGAAAGA
EST: gi|22015203|gb|BQ800237.1|BQ800237
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110417828|gb|EC983915.1|EC983915
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110420832|gb|EC987116.1|EC987116
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110360431|gb|EC923523.1|EC923523
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110694927|gb|EE072360.1|EE072360
EST:     CCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: CCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110376469|gb|EC941534.1|EC941534
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|32456654|gb|CD797828.1|CD797828
EST:     AGCTCGGTTGGGCGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: AGCTCGGTT-GG-GCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|87585433|gb|DY474153.1|DY474153
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110684799|gb|EE062490.1|EE062490
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|32460550|gb|CD801724.1|CD801724
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTGCATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|352794911|gb|FQ477021.1|FQ477021
EST:     ACACACTGTTCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAGG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110717751|gb|EE093882.1|EE093882
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|56409139|gb|CX017391.1|CX017391
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34362050|gb|CF403635.1|CF403635
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|33403511|gb|CF209138.1|CF209138
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110703408|gb|EE080230.1|EE080230
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110706303|gb|EE081721.1|EE081721
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|30302617|gb|CB979411.1|CB979411
EST:     AGAG-AGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: AGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110685361|gb|EE063692.1|EE063692
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|352787053|gb|FQ476086.1|FQ476086
EST:     ACACACTGATCAAAGAGAAGTTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34363594|gb|CF405179.1|CF405179
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110696058|gb|EE074787.1|EE074787
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110374847|gb|EC939785.1|EC939785
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110706444|gb|EE081974.1|EE081974
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|87586924|gb|DY474999.1|DY474999
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110702246|gb|EE080738.1|EE080738
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAN                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|83274886|gb|DV938982.1|DV938982
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|87584337|gb|DY473547.1|DY473547
EST:     AAGAGAAGCTCGGTTGGGCTCC-ACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: AAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34361950|gb|CF403535.1|CF403535
EST:     TCAAAGAGAAGCTCGGTTGGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: TCAAAGAGAAGCTCGGTT-GGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|83276907|gb|DV940915.1|DV940915
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|30302683|gb|CB979477.1|CB979477
EST:     GATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: GATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|32250120|gb|CD715939.1|CD715939
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|22012401|gb|BQ797435.1|BQ797435
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110701592|gb|EE079340.1|EE079340
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110382558|gb|EC946859.1|EC946859
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110390372|gb|EC955277.1|EC955277
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|71876393|gb|DT025448.1|DT025448
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|32245541|gb|CD711360.1|CD711360
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|33409632|gb|CF215259.1|CF215259
EST:     ACGCACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATTCTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|110388483|gb|EC953241.1|EC953241
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|71890476|gb|DT039531.1|DT039531
EST:     ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
EST: gi|34416413|gb|CF415167.1|CF415167
EST:     ACACACTGATCAAGGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAG                         GATGGCCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG
genomic: ACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatat ... tgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATCCATCACATTCCAGGCCCAGAGGGTGTGCGTGGTCGTAACTCAGACAACACACTGATCAAAGAGAAGCTCGGTTGGGCTCCAACAATGAAATTGAAGgtacttatataacaagacaccgcttgccttattacgaggtttttttaacttatgatttggattatgcaatgggtcagtcttacaagccaagtgtatatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaga