Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAAAATGGAGATGTTGGCTGAAAAGCACGGATGCACCGCTGCACAGCTTGCGCTAGCTTGGGTTCTTCGTCAAGGGGATGATGTTGCTCCTATCCCTGgtgagtgaaattttttctgccatacaagttatacccttggaggttgggacaaatcctaaatatgtgcttttgatccttattccatatgatgtag

Basic information

species Vitis vinifera
transcript Vv14s0030g02050.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g02050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os10g28320.2 (Oryza sativa), 5'ss of exon 5
ACTAAAATGGAGATGTTGGCTGAAAAGCACGGATGCACCGCTGCACAGCTTGCGCTAGCTTGGGTTCTTCGTCAAGGGGATGATGTTGCTCCTATCCCTGgtga-gtga-aattttttctgccatacaagttatacccttggaggttgggacaaatcctaaatat---gtgcttttgatccttattccatatgatgtag----
||   ||| ||   | | ||    ||| | || ||| || |||| || ||||| ||  | |||||||||| ||||||||||||||||| ||| ||||||||| | |||  ||   | | |   |  |      |  |    || ||     |   || |  |||     | || |    | | |     | |  |        
ACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTGCTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGgtaatgtgttaaacatatttagtacgctgtcagtgtc---agaagtattttcctgtcttggatactccatactgtcaggcttaacatggtcttttacctgttc

upper sequence: Vv14s0030g02050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os10g28320.3 (Oryza sativa), 5'ss of exon 5
ACTAAAATGGAGAT--GTTGGCTGAAAAGCACGGATGCACCGCTGCACAGCTTGCGCTAGCTTGGGTTCTTCGTCAAGGGGATGATGTTGCTCCTATCCCTGgtgagtgaaattttttctgccatacaagttatacccttggaggttgggacaaatcctaaatatgtgcttttgatccttattccatatgatgtag------------
 ||    ||    |     | ||  | | |   | | ||  |  | | | ||||    ||  |    | |||  ||   | ||  ||  |  | |  | |    |  ||     |   ||||   ||  | | | | | |||    |    |||      |  ||||  ||   |||| |  |  || || |  |             
TCTTCTTTGCTACTTCACAGACTAGACATCCAAGGTACAATGGGGAA-AACTTGGAGAAGAATAAAGTTTTCTACACACGAAT--TGAAGAGCTTGCCACCAA-

upper sequence: Vv14s0030g02050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g43090.1 (Oryza sativa), 5'ss of exon 6
ACTAAAATGGAGATGTTGGCTGAAAAGCACGGATGCACCGCTGCACAGCTTGCGCTAGCTTGGGTTCTTCGTCAAGGGGATGATGTTGCTCCTATCCCTGgtgagtgaaattttttctgcc--atacaagttatacccttggaggttgggacaaatcctaaatatgtgcttttgatccttattccatatgatgtag----
   |||| |||   | ||||  | ||||||   |||| | |||| ||||| ||  ||||||||||||||| ||||||||||||||| |  || || || ||||||||  ||     |  ||  ||  || | |||       | |  |    | ||    |||   | ||     | ||| ||     |||  ||     
CTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgctataaccccgtcctgatgtaactgatagtgcacaatgcagatctatatggccaatgctttctcccttttcttttttaccttgagataaaggg

upper sequence: Vv14s0030g02050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G176903_T01 (Zea mays), 5'ss of exon 5
ACTAAAATGGAGATGTTGGCTGAAAAGCACGGATGCACCGCTGCACAGCTTGCGCTAGCTTGGGTTCTTCGTCAAGGGGATGATGTTGCTCCTATCCCTGgtgagtg-----aaattttttctgccatacaagttatacccttggaggttgggacaaatcctaaatatgtgct--tttgatccttattccatatgatgtag
   ||||| ||    |||||  | ||| ||   |||| | | || ||||| || ||||| |||||||| ||||||||||||||||| | |||||| || |||| |       |||| | | ||     |   ||    | |   | |    |   | || |  | |||   |    |  |     ||  || ||||  | |
CTGAAAATAGAAGATTTGGCGAAGAAGTACCAGTGCAGCCCAGCTCAGCTAGCTCTAGCCTGGGTTCTGCGTCAAGGGGATGATGTGGTTCCTATACCAGgtgtgaccttataaatctgtcctcgttcaatggtagcgcacaatgtgcactgctgatattcatactattcccaagataaacaagaatatcagatga-atgg