1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCACAGCTTGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacgtgttcttcctctcaacctagcacacaaagaacatggttaacatctattcttgtcctcacaataactcattcatgtctcttttgatgtcgg...
species | Vitis vinifera |
transcript | Vv14s0030g02020.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTG GGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGAEST: gi|30252864|gb|CB970415.1|CB970415
genomic: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacg ... atacatgtagGGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
EST: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTG GGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGAEST: gi|110425276|gb|EC991658.1|EC991658
genomic: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacg ... atacatgtagGGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
EST: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTG GGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGAEST: gi|71875780|gb|DT024835.1|DT024835
genomic: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacg ... atacatgtagGGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
EST: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTG GGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGAEST: gi|30297798|gb|CB974592.1|CB974592
genomic: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacg ... atacatgtagGGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
EST: TCAAGGGGATGATGTGGCACCTATCCCTG GGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGAEST: gi|30297738|gb|CB974532.1|CB974532
genomic: TCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacg ... atacatgtagGGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
EST: GTGGCACCTATCCCTG GGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGAEST: gi|33404158|gb|CF209785.1|CF209785
genomic: GTGGCACCTATCCCTGgtgagtcacg ... atacatgtagGGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
EST: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTG GGACCCCTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
genomic: TGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacg ... atacatgtagGGACCACTAAGATTAAAAATCTTGATGATAATATCAGTTCTTTGAGATTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCACAGCTTGCACTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGCACCTATCCCTGgtgagtcacgtgttcttcctctcaacctagcacacaaagaacatggttaacatctattcttgtcctcacaataactcattcatgtctcttttgatgtcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaac