Sequence
atgc intronic sequence ATGC exonic sequenceTTTCTGATTTTACAAAAGCAAGTTGGTGGTATACCAAGGGGAGACGGGTTAGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTGgtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G37340.1 (Glycine max), 5'ss of exon 6
TTTCTGATTTTACAAAAGCAAGTTGGTGGTATACCAAGGGGAGACGGGTTAGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTGgtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctag
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TAAGTGATTATGCTAAAGCCAAATGGTGGTACAACAAGGGCAAACGGTTTAGATCGACCTCATGGACTAATGTGAATGAGGCATCAAGCAGGTCACACTGgtgggttataggtttacttagatacttcaaagtattttaatgggttt-ctcagcttgatagttacgttatctgtttagcttcatatatctag
upper sequence: Vv14s0030g01360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G27950.1 (Arabidopsis thaliana), 5'ss of exon 6
TTTCTGATTTTACAAAAGCAAGTTGGTGGTATACCAAGGGGAGACGGGTTAGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTGgtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaatta-cgttatctgtttagttctatatatctag
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TAATGGATTTTACAAAGGCTAGATGGTGGTATAACAAAGGGAGACGAGTGAGATCAACTTCTTGGACAAATGTAAACGAAACTTCGAGCAGATCTCATTGgtaagttcttgat-------ggttccaactgttcatttgttatttc---tcagtttggtagttagccttattcaattagtt---tatctctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190513|gb|CF609862.1|CF609862EST: AGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTG CTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGC
genomic: AGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTGgtgggttcca ... atatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCTGATTTTACAAAAGCAAGTTGGTGGTATACCAAGGGGAGACGGGTTAGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTGgtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC