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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACATTACTTTTGTGCTAGCTGTTGGCCGCTTCATCAGACTGCAGTGTTCAGACCTGAGAATGAGAATACCCTTTGAGAATCTTCCCTCCTGTGACAGgtaagcaattttcatgtctgctgcatgtcactagctcgtctgacacccagtaatgttgtgaataattctgcatatctgaacctctgtttgtgttgctctt...

Basic information

species Vitis vinifera
transcript Vv14s0030g00180.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g29230.1 (Oryza sativa), 5'ss of exon 9
TCTACATTACTTTTGTGCTAGCTGTTGGCCGCTTCATCAGACTGCAGTGTTCAGACCTGAGAATGAGAATACCCTTTGAGAATCTTCCCTCCTGTGACAGgtaagcaattttcatgtctgctgcatgtcactagctcgtctgacacccagtaatgttgtgaataattctgcatatctgaacctctgtttgtgttgctctt--
| |||||||| |||||| |||||||||   | || || |||||||| || ||||| ||||||||||||||||| | |||||||||||| || ||||||||||| | | || | || | |  |  ||      || |  | |   || |||| |  |   |  | || |    |||||  |   |  ||   |   ||     
TGTACATTACCTTTGTGTTAGCTGTTGCAAGATTTATTAGACTGCAATGCTCAGATCTGAGAATGAGAATACCTTATGAGAATCTTCCATCTTGTGACAGgtatgtacttatgatatattttagataatggaagtttttattgaactcagttacatcaagg-tgatacaat-tatcttgagaacacttccggcctctgcata

upper sequence: Vv14s0030g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G42670.1 (Glycine max), 5'ss of exon 3
TCTACATTACTTTTGTGCTAGCTGTTGGCCGCTTCATCAGACTGCAGTGTTCAGACCTGAGAATGAGAATACCCTTTGAGAATCTTCCCTCCTGTGACAGgtaagcaattttcatgtctgctgcatgtcactagctcgtctgacacccagtaatgttgtgaataattctgcatatctg---aacctctgtttgtgttgctctt-
                     | ||||| || || |||||| | || ||||| ||| || |||||||||| || |||||||||||||| || ||||||||||   | |  |  |    |  |    | |||    | || |   | | || |||      ||    | |  |||  ||   ||    ||| |   ||| |    
---------------------CAGTTGGACGTTTTATCAGATTACAATGTTCTGACTTGCGAATGAGAATTCCTTTTGAGAATCTTCCTTCTTGTGACAGgtgctcgagctatagtgttcttatggggcacccttttgttt--tagcgaggaataaaacaaaatggtttctataagtgtccaaataatgtgttcattgatgcag