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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcag

Basic information

species Vitis vinifera
transcript Vv14s0006g02720.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 6
TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgt--------ttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttga-aactgaaacacat---tttaaatggtcag
||| ||||| ||   ||| |  || ||||| |||||  | ||||||||||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||| || ||          ||||| || |    || ||| ||  |||| |  | | | | || | ||||        | ||||||   |  |    ||       |||
TGCAACAGCTCATGATGTTCGCACAATGATTATTGGCCGATTACTTGCTGGGATTGGTATTGGCATATCTTCTGCTCTTGTGCCCCTTTACATATCTGAGgttgtgataactgataaattcaaattgttgaaatgattgttcagctactactggctaggttct-tgaacatgcccaacaactgagctatttacgcttgcgcctgcag

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 6
TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgtttcaatttttcattattattatt----atgctat-tttttgttcgtttttatgaatgcctttgaaactg--aaacacattttaaatggtcag------------------------------------
 || ||||| ||   | | |  || ||||| |||||| |||| |||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||| || ||      |     || |    || ||    |    ||  | ||||    |  ||    | | | ||    ||   || |  |  |  |||    |                                    
CGCAACAGCTCAAGATATCCGCACCATGATTATTGGTCGGTTGCTTGCTGGAATTGGTATTGGGATCTCATCTGCACTTGTACCCCTTTACATATCTGAGgttgtgatacgatgaaacgacagttgctttgttcaaaacctgatgctgttgtgaaatgctacagttacttctgtctttgttcaatagctactgcatgcattgacgaacatctccaacaaatgaacttgtactttgcag

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 10
TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttg---aaactgaaacacattttaaatggtcag------------------
||| ||||| ||   | | |  || ||||| |||||  | || |||||||| ||||| || ||  |||||||||| ||||| || ||||||||||||||||| || ||   |  |  |  || |    || ||     |  |  || | ||| | ||   | | | ||       |||   ||||    ||                         
TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatacgttgacatgacagttgctttgtt-caaaacctaatgct-gttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcag

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 6
TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcag
||| ||||| |||||||| ||| | ||||| |||||| | ||||||||||| || ||||||||  |  |||||||  | || ||||| ||||||||||||||  |    ||  |  || |  ||||  ||   ||  ||   |   |   ||| | || |     | | ||||         | | ||||| |||
TGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAGgtgct----ttatatattattcttatctttgagatcatagactaaata-atttatgtggactgtgtggtaactc-------ctcttaatgggcag

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G16150.3 (Arabidopsis thaliana), 5'ss of exon 5
TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgtttcaatttttcattattatta---ttatgctattttttgttcgtttttatgaatgcctttgaaactgaaacacattttaa--atggtcag
||| ||||| ||||||||||||||||||||  | ||  |  | || ||||| ||||||||||| |||||||| ||  |||| |||||||||||||||||||| ||     | |   ||||||||||| ||    || |   ||    |||| | |||  | |     | ||   ||||| |   |  | |   | |||||
TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaatactgattttcattatttttgcacttttagcataagatgttagatttgtttatatgttatgtctctgaagcgtttgatgatggttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370956|gb|EC934605.1|EC934605
EST:     TGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG                         ATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTT
genomic: TGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgt ... aaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTT