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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTCACCTTCCAAGGGAAACGGCTTCTAAAGCTCACTGGTTCAGACGCCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAGgtactgttattgattttaattgattctttccaaacaaccggttgtaaaatggctgatattctttttatttttattattttttacgtaccag

Basic information

species Vitis vinifera
transcript Vv13s0158g00360.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTCTTCACCTTCCAAGGGAAACGGCTTCTAAAGCTCACTGGTTCAGACGCCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAGgtactgtt-attgattttaattgattc--tttccaaacaaccggtt-gtaaaatggctgatattctttttatttttattattttttacgtaccag
  |  |||  |||  ||| |||   ||||| || ||   |||  | ||| |||      ||||||||||| |||| |||||  |||||||||||||||||||||  ||     |    ||   |  |   |   | | ||  | |  |||| | |      |  |  | ||     |                  
AATTCTCAATTTCGCAGGCAAATCACTTCTCAAACTAGATGGCCCTGACTCCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcgcaaacaaaaaccaacccaactcttatataaaagataagtaacaagagaatcaaacggtgtacaaacag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188333|gb|CF607682.1|CF607682
EST:     CCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAG                         GTATTCAATGAAATAAACAGCCGTGATATGGAGAAGATAAATGTTTTCCAA
genomic: CCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAGgtactgttat ... tacgtaccagGTATTCAATGAAATAAACAGCCGTGATATGGAGAAGATAAATGTTTTCCAA
EST: gi|30252763|gb|CB970314.1|CB970314
EST:     CCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAG                         GTATTCAATGAAATAAACAGCCGTGATATGGAGAAGATAAATGTTTTCCAA
genomic: CCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAGgtactgttat ... tacgtaccagGTATTCAATGAAATAAACAGCCGTGATATGGAGAAGATAAATGTTTTCCAA