Sequence
atgc intronic sequence ATGC exonic sequenceAGATTCAAATAGAAGGCGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGGgtatgattggttgtatgattttgtttcaagttatggcaataaattatctgagatttgataatttacattaatgtttgcaaccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G334061_T01 (Zea mays), 5'ss of exon 7
AGATTCAAATAGAAGGCGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGGgtatgattggttgtatgattttgtttcaagttatggcaataaattatctgaga--tttgataatttacattaatgtttgcaaccag---------------
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AGATTCAAATCGAAGGAAATGCTCTGTTCTCCAGTGGAATCCAGATATGTCCACCCAGTTGATTGTTGCATCAGATGATGACAGTTCTCCCTCACTGAGAgta-attaccttttctaattcccctttcctctacacacccaatctaaaaaataatctagtttacttacatttccccatgtaagctaatagaacctggaatt
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G01290.1 (Glycine max), 5'ss of exon 6
AGATTCAAATAGAAGGCGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGGgtatgat-tggttgta--tgattttgtttcaagttatggcaataaattatctgagatttgataatttacattaatgtttgcaaccag
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AGATTCGGTTAGAAGGCGGTGTTCTGTTTTGCAGTGGAATCCTGATGTTGCCACACAACTAGTCGTTGCATCAGATGAAGACAGCTCTCCTTCTTTGAGGgtatagcatagtcactgcagattatttgtctgtttatttcaa-gcattgtatgta--ttgac--cttatatgagcatgttgatgcag
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G36050.2 (Glycine max), 5'ss of exon 6
AGATTCAAATAGAAGGCGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGGgtatgat-tggttgta--tgattttgtttcaagttatggcaataaattatctgagatttgataatttacattaatgtttgcaaccag
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AGATTCGGTTAGAAGGCGGTGTTCTGTTTTGCAGTGGAATCCTGATGTTGCCACACAACTTGTTGTTGCATCAGATGAAGACGGCTCTCCTTCTTTGAGGgtatagcatagtcattgcagattatttgtctgtttatttcaa-gggttgtgtgta--ttgac--cttatatgagcatgttgatgcag
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 6
AGATTCAAATAGAAGGCGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGGgtatgattggttgtatgattttgtttcaagttatggcaataaattatctgagatttgataatttacattaatgtttgcaaccag
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AGATTCAGTTCGACGCCGGTGCTCTGTTTTACAGTGGAACCCTAACGTTACTACTCAGATAATGGTTGCATCAGATGACGACAGTTCACCTACTTTGAAGgtaaggaatcatttaacgcgttgcttca---tatagt--tcaattttggttcttttagtgatgtaaggta---tctgcaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34544619|gb|CF512851.1|CF512851EST: CCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGG CTTTGGGATATGCGTAACACAATAACACCAGTGAAAGAGTTTGTGGGGCAC
genomic: CCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGGgtatgattgg ... ttgcaaccagCTTTGGGATATGCGTAACACAATAACACCAGTGAAAGAGTTTGTGGGGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATTCAAATAGAAGGCGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTAGTTGTTGCATCAGATGAAGACAATTCACCTGCCCTTAGGgtatgattggttgtatgattttgtttcaagttatggcaataaattatctgagatttgataatttacattaatgtttgcaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA