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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTATGGTGAATTGCATCACGCTGAATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATGgttagcacctctctgcatattgattttacatatagttttctaaatcatcactcatctctatggagtgctattgaggcagtttgttattcatttaaatgatcttaaag

Basic information

species Vitis vinifera
transcript Vv13s0156g00080.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 2
GTCTATGGTGAATTGCATCACGCTGAATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATGgttagcacctctctgcatattgattttacatatagttttctaaatcatcactcatctctatggagtgctattg-aggcagtttgttattcatttaaatgatcttaaag
||| ||||||| ||||||||||||||| || ||||||||||| |  || ||||||||||| ||||||||||| ||||| ||      |||     |  | ||| |||| |  |   |||    | | |       ||| | | ||| || |  ||  |   |||   ||| ||           
GTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATGgtaagt-----tcta---gtgaaatttccatagaaatcaataatatgttaat-------atgaattactaatgtatacaactaactatc--tttgaag----------

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G42210.1 (Glycine max), 5'ss of exon 5
GTCTATGGTGAATTGCATCACGCTGAATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATGgttagcacctctctgcatattgattttacatatagttttctaaatcatcactcatctctatggagtgctattg-aggcagtttgttattcatttaaatgatcttaaag
||| ||||||| ||||||||| ||||| || ||||||||||| |  || ||||||||||| ||||||||||| ||||| ||      |||     |  | ||| ||||||  | |    | ||  |    |    ||| | | ||| || |  ||  |  | ||   ||| ||           
GTCCATGGTGAGTTGCATCACACTGAACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATGgtaagt-----tcta---gtgaaatttccatataaatct----accactat--gttaacatgaattactaatgtatacaactaatcatc--tttgaag----------

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G44280.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCTATGGTGAATTGCATCACGCTGAATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATGgttagcacctctctgcatattgattttacatatagttttctaaatcatcactcatctctatggagtgctattgaggcagtttgttattcatttaaatgatcttaaag
| ||||||| |||||||| ||  |||||||||||||||||||||  ||  | ||||  |||||||| ||||  ||||||||  | |  |      ||  | |||  ||   | ||  ||||      | |  | |||      |  ||    |   |  |||||||                 
GGCTATGGTTAATTGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCGTAATGCGTTTAGCATGgttagttctttccct----ttagtgttatttaggctctttaaaatgcctctttaggtttatatgtaacatttccatcgactgtttattcag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706475|gb|FC054996.1|FC054996
EST:     ATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATG                         GTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGC
genomic: ATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATGgttagcacct ... gatcttaaagGTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGC