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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAGgtactaatataatccattttctgtatttccaactttctttaaattatttccaagattaattcactgtcagtttttcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03330.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G21600.1 (Glycine max), 5'ss of exon 5
TTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAGgtac--taatataatccattttctgtatttcc---------aactttctttaaattatt--tccaagattaattcac-tgtcagtttttcag
|| ||| ||||||||||||||| | ||||||||||||| || |||||||| ||||||||||||   |  |  |||    |||   | ||||          || || ||||   ||  |   |   | ||||||  | | |   |||| |||
TTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGgtataatgctggaattttcttttactgtttcttaaaattaaaatttacttttggtttctgaccgttggttaatttgccttttccttttccag

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G28970.2 (Glycine max), 5'ss of exon 5
TTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAGgta-----ctaatataatccatt-----ttctgtatttccaacttt--ctttaaattatttccaa-gattaattcac-tgtcagtttttcag
|| ||| ||||||||||||||| | ||||||||||||| || |||||||| ||||||||||||     || | ||  || |||     ||||| |  |  || |||   |||   || |  ||   | ||||||  | | ||   |||||||
TTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGgtataatgctcaaattttctattactgtttctgaaaattaaaatttacttttggtttctgaccgttggttaatttgcctttccccttttcag