Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgataaactttttctcctctgccctataccatctgcttgcttgggatttccttttctgatactctttatctctcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03320.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416831|gb|CF415585.1|CF415585
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110423901|gb|EC990254.1|EC990254
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110699314|gb|EE076202.1|EE076202
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110726136|gb|EE101653.1|EE101653
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|351043024|gb|FQ443866.1|FQ443866
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110730208|gb|EE107028.1|EE107028
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|351029495|gb|FQ436889.1|FQ436889
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAA
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAA
EST: gi|46918368|gb|CN547697.1|CN547697
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|349829621|gb|FQ421139.1|FQ421139
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110410730|gb|EC976422.1|EC976422
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110732400|gb|EE107653.1|EE107653
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAAGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|349827978|gb|FQ422846.1|FQ422846
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|87585501|gb|DY474192.1|DY474192
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|30301939|gb|CB978733.1|CB978733
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110685295|gb|EE063554.1|EE063554
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110367404|gb|EC931336.1|EC931336
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|349825323|gb|FQ418055.1|FQ418055
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110726723|gb|EE102752.1|EE102752
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|22008796|gb|BQ793830.1|BQ793830
EST:     GCCAGTTCCAGTTTCCCAGGCATGTG                         ATAGGAGAACCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|18458749|gb|BM437027.1|BM437027
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110381982|gb|EC938169.1|EC938169
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|30301871|gb|CB978665.1|CB978665
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|351014234|gb|FQ434823.1|FQ434823
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|30320499|gb|CD003761.1|CD003761
EST:     GGAAGGCCAGTTCCAGTTTCCCAGGCATTTN                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATN
genomic: GGAAGGCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|351016330|gb|FQ446190.1|FQ446190
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110727163|gb|EE103612.1|EE103612
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|56409315|gb|CX017567.1|CX017567
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|26265335|gb|CA816398.1|CA816398
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|349827894|gb|FQ422762.1|FQ422762
EST:     GCCAGTTCCAGTTTCCCAGGTATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|56409393|gb|CX017645.1|CX017645
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGCCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|110710077|gb|EE086097.1|EE086097
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATANGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAAGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|349824073|gb|FQ417460.1|FQ417460
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|83276943|gb|DV940951.1|DV940951
EST:     GCCAGTTCCAGTTTCCCAGGCATTTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
EST: gi|83275823|gb|DV939831.1|DV939831
EST:     GCCAGTTCCAGTTTCCCAGGCATCTG                         ATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT
genomic: GCCAGTTCCAGTTTCCCAGGCATCTGgtatgtgata ... tatctctcagATAGGAGAGCCGGGTCTTCCATGTCTGGTTACAGAAAAGAGGATTACAATT