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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAGTATGGAGTCAAGGGACATCTTCTTAACGCTGGCATTTGTCAACTTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAGgtctaagtttgtctttgtttagctttttgaaattgtatcctatgggctggatagaaatatcaatattgctttttcttttgcag

Basic information

species Vitis vinifera
transcript Vv13s0067g02210.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718974|gb|EE096423.1|EE096423
EST:     TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAG                         GAAATGGATCCAACTTTTTCAGGAACACGTGGATATAAATTACTTGTG
genomic: TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAGgtctaagttt ... tcttttgcagGAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTG
EST: gi|32272370|gb|CD721529.1|CD721529
EST:     TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAG                         GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTG
genomic: TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAGgtctaagttt ... tcttttgcagGAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTG
EST: gi|351012547|gb|FQ430111.1|FQ430111
EST:     TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAG                         GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTG
genomic: TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAGgtctaagttt ... tcttttgcagGAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTG
EST: gi|30327709|gb|CD010971.1|CD010971
EST:     TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAG                         GAAATGGATCCAACTTTTTCAGGAACACGTGAAATATAA-TTACTTGTG
genomic: TTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAGgtctaagttt ... tcttttgcagGAAATGGATCCAACTTTTTCAGGAACACGTGAA-TATAAATTACTTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGAAGTATGGAGTCAAGGGACATCTTCTTAACGCTGGCATTTGTCAACTTTGCAAAGGCGATGTCGTTGCAATTACCAATGCATTAGACCGATATCAGgtctaagtttgtctttgtttagctttttgaaattgtatcctatgggctggatagaaatatcaatattgctttttcttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG