1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACATTGGTCTGCACTTGTCTCAGATGTTTACTTGGAGGGTCTAGCTGTAAACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaattttaaagttaattaaaatagattgatctgtttgtcttcaaatttttctacaaaaatttccagtataatataggcttcatgaaaacatgcgatgatatactgagttcctgttcttcacag
species | Vitis vinifera |
transcript | Vv13s0067g01690.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACTGGTCAAGCATACGGAACATAATGGATATGAATGCTGGTTATGGAGG ATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCCEST: gi|51051449|gb|CO819062.1|CO819062
genomic: AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaatt ... ttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
EST: AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGG ATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCCEST: gi|110390996|gb|EC955947.1|EC955947
genomic: AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaatt ... ttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
EST: AACTGGTCAAGCATACGGAACATAATGGATATGAATGCTGGTTATGGAGG ATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
genomic: AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaatt ... ttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATTGGTCTGCACTTGTCTCAGATGTTTACTTGGAGGGTCTAGCTGTAAACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaattttaaagttaattaaaatagattgatctgtttgtcttcaaatttttctacaaaaatttccagtataatataggcttcatgaaaacatgcgatgatatactgagttcctgttcttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG