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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAGTCAATGTTTTGAACGCCGAACATTTGCTGACCCATTTGAAGTTTACAGGGCATTCAGAGTTGTGAATCCGAGTCCATTTATGGCGTACTTACAAgtatgtgtgtgctcctctacaaatacattattgtactacttttacatgtatttttttagtagttctgggtttgtaattttttatatttatcttctatttctcaatcag

Basic information

species Vitis vinifera
transcript Vv13s0067g00400.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g00400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G05730.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTAAGTCAATGTTTTGAACGCCGAACATTTGCTGACCCATTTGAAGTTTACAGGGCATTCAGAGTTGTGAATCCGAGTCCATTTATGGCGTACTTACAAgtatgtgtgtgctcctctacaaatacattattgtactacttttacatgtatttttttagtagttctgggtttgtaattttttatatttatcttctatttctcaatcag
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GCTGAGTCAACGTTTTGAGCGGCGAACATTTGCAGACCCCTTTGAAGTTTATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtg-atg-------gagagaacatttctcaacaacttt-----gcatttt----gtacttgtggataaaccatcaatgctgttttcgttctgttattcag----