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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAGAACATCAAGCAGATTCTTGGACTACAGCAAGGGAAGGAGTATGACAGTATCAAGTCATTAAGATATGGTCATTTGATGATAATGACTGATCAGgttggccaaacaattccagttttcctgctttacttgcgactgttattggcctttgccaatagagtaatatgagtccttggttaacagtagtttatttcttctcttacacag

Basic information

species Vitis vinifera
transcript Vv13s0064g00560.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 6
AATTCAGAACATCAAGCAGATTCTTGGACTACAGCAAGGGAAGGAGTATGACAGTATCAAGTCATTAAGATATGGTCATTTGATGATAATGACTGATCAGgttggccaaac-aattccagttttcctgctttacttgcgactgttattggcctttgccaatagagtaatatgagtccttggttaacagtagtttatttcttctcttacacag
|||||| || || ||| ||||||||||||| ||||||   || |||||    ||  | ||||| || |||||||||||||||||||| ||| |||||||||| ||   |   |  |   ||  |  || ||| |||     |||   | || ||  |  | |   ||||    || |    ||    || ||| |                 
AATTCAAAATATAAAGAAGATTCTTGGACTGCAGCAAAACAAAGAGTACACAAGCGTGAAGTCTTTGAGATATGGTCATTTGATGATTATGGCTGATCAGgtgggtttatttagatatcgtacttttgttttgctt-----tgtctattgctttcacggagattataatg---gttcaactttctgggtggttcag----------------

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 6
AATTCAGAACATCAAGCAGATTCTTGGACTACAGCAAGGGAAGGAGTATGACAGTATCAAGTCATTAAGATATGGTCATTTGATGATAATGACTGATCAGgttggccaaac-aattccagttttcctgctttacttgcgactgttattggcctttgccaatagagtaatatgagtccttggttaacagtagtttatttcttctcttacacag
|||||| || || ||| ||||||||||||| ||||||   || |||||    ||| | ||||| || |||||||||||||||||||| ||| |||||||||| ||   |   || |   ||  |  ||  || |||  | || ||  |     || |    ||| ||  ||| || |    ||    || ||| |                 
AATTCAAAATATAAAGAAGATTCTTGGACTGCAGCAAAACAAAGAGTACACAAGTGTGAAGTCTTTGAGATATGGTCATTTGATGATTATGGCTGATCAGgtgggtttatttaaatatcgtagttttgtcttgctt-tgcctattgcttttgcttccacggagattataatg-gttcaactttctgggtggttcag----------------