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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTGTAGAGACATCGGAGGATGGATCTAAATGGGGTCATGTGAGGAAAGGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcctgcttatttgtgctttttccctctgggatctatcttttttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g05390.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05390.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G33300.1 (Glycine max), 5'ss of exon 8
TGAGTGTAGAGACATCGGAGGATGGATCTAAATGGGGTCATGTGAGGAAAGGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgta--tatgcctgctt--atttgtgctttttccctctggg------atctatcttttttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcag
||||||  |||||||| || ||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| ||| ||||| ||||| |||||||||||  ||| | || |   || | |  ||| |     ||        ||  | |  |   ||||||       || |   | |||  ||        || | |   |  |||  ||||||||||  |   |   | ||   |   ||| |             
TGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGgtacttatacatgataaaatatataatttgtgttgatgaacaaaaaatacaaccctacattttatgcaggtatctgtagtttatactgtttacttattctgaacactggtt-ttgtttcttcctttcggcaa-attgcaatttcttgcag------------

upper sequence: Vv13s0019g05390.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G34240.1 (Glycine max), 5'ss of exon 9
TGAGTGTAGAGACATCGGAGGATGGATCTAAATGGGGTCATGTGAGGAAAGGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtat--atgcctgcttatttgtgctttttccctctgggatctatctttt-ttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcag
 |||||  |||||||| || ||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| ||| ||||| ||||| ||||| ||||||  || | |  |  | | |    |||   |    || | |  |       |  || | ||  | |    | ||  ||         || | |   |  |||  ||||||||||  |  ||   | ||   |   ||| |             
CGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTATAGgtatttatacattatactatatataatttgtgttgatgaacaaaatacaaccctacattataatatgcactgtttacttt---------ttctgaacactggtt-ttgtttcttcctttc-tccaaattgcaatttcttgcag------------

upper sequence: Vv13s0019g05390.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G04460.3 (Arabidopsis thaliana), 5'ss of exon 7
TGAGTGTAGAGACATCGGAGGATGGATCTAAATGGGGTCATGTGAGGAAAGGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcctgcttatttgtgctttttccctctgggatctatcttttttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcag
||||||  || ||||| |||||||| || | |||| | ||||| || |||||||||||||| ||||||||||| | |||||| ||  |||| ||||| |||||  |  ||   | ||||       ||        |  |||  | | ||    ||| |||       |||    ||   | |||                                                                   
TGAGTGCGGAAACATCAGAGGATGGTTCAAGATGGAGCCATGTAAGCAAAGGAACTTGTTGCGTTTGTTGTGACAACCACATTGATGCTCTCTTGTATAGgtaactaactaactctttgc------tcaaaaaaaaaattattgtctcttaaactcaaaactgaacaaatcc--tttaaaattacag-----------------------------------------------------------------

upper sequence: Vv13s0019g05390.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G04460.2 (Arabidopsis thaliana), 5'ss of exon 7
TGAGTGTAGAGACATCGGAGGATGGATCTAAATGGGGTCATGTGAGGAAAGGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcctgcttatttgtgctttttccctctgggatctatcttttttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcag
                                      ||||| || |||||||||||||| ||||||||||| | |||||| ||  |||| ||||| |||||  |  ||   | ||||       ||        |  |||  | | ||    ||| |||       |||    ||   | |||     |  | ||      ||| |  |  |   |  | | |       | ||| || |||  | | | 
-------------------------------------CCATGTAAGCAAAGGAACTTGTTGCGTTTGTTGTGACAACCACATTGATGCTCTCTTGTATAGGTAACTAACTAACTCTTTGC------TCAAAAAAAAAATTATTgtctcttaaactcaaaactgaacaaatcc--tttaaaattac-----agatgcggacacatgtgtacttgctcaaaatgtgcaaatgagc-ttgtaagaaacggagga-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404834|gb|CF210461.1|CF210461
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: gi|110362870|gb|EC926428.1|EC926428
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: gi|110402602|gb|EC960544.1|EC960544
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: gi|30302439|gb|CB979233.1|CB979233
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTT
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTT
EST: gi|110697361|gb|EE074284.1|EE074284
EST:     GGAACTTGTTGTGTTTGTTGTGATAACCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAATTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: gi|110722021|gb|EE097887.1|EE097887
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAA-TGTGCAAATGA-TTGGGTTC-TG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGG-TTCGTG
EST: gi|30297155|gb|CB973949.1|CB973949
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: gi|110396940|gb|EC962647.1|EC962647
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: gi|34362695|gb|CF404280.1|CF404280
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAANCTGAGCCAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: gi|110405556|gb|EC971098.1|EC971098
EST:     GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTTTTTATTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG