Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagcattgatttttctttcgttcattcttcttttgtgtgagcatgtgtgtgtgtgtgtgttttttttattgatgttcttggtgtgcagtcctttgtcctccctgtcatttatgattgtgtttcctttcctatgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g05250.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 8
GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagcattgatttttctttcgttcattcttcttttgtgtgagcatgtgtgtgtgtgtgtgttttttttattgatgttcttggtgtgcagtcctttgtcctccctgtcatttatgattgtgtttcctttcctatgcag
|||| |||| | ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || |||||||     |||  ||||  |  ||  | | |    |||  ||    ||  ||| | ||      ||  |      |||  ||    |||||                                                
GGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagc----ttggctttttatgagtaaact-tgaaattgcatgt-tgtgcctgtttatgcaaacgttcat-----gtgtatttaa-atgcag------------------------------------------------

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G34150.2 (Glycine max), 5'ss of exon 6
GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagcattgatttttctttcgttcattcttcttttgtgtgagcatgtgtgtgtgtgtgtgttttttttattgatgttcttggtgtgcagtcctttgtcctccctgtcatttatgattgtgtttcctttcctatgcag
|||| |||  | ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || |||||||     |||  ||||  |  ||  |     |||     ||  | | ||||  ||| | || |  | ||  || |||  ||    |||||                                                
GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagc----ttggctttttatgggtaaa-----cttgaaattgcacgt-tgtgcctgtttatgctaatgttcatg-tgtatttaa-atgcag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728729|gb|EE104550.1|EE104550
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|34550427|gb|CF518645.1|CF518645
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|351028003|gb|FQ425904.1|FQ425904
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCCAACATACCTGCAAAGAA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAA
EST: gi|32249928|gb|CD715747.1|CD715747
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGANAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|30137894|gb|CB923232.1|CB923232
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|27578522|gb|CB001217.1|CB001217
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|351040604|gb|FQ438148.1|FQ438148
EST:     CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|37190333|gb|CF609682.1|CF609682
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|110392317|gb|EC957652.1|EC957652
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|351046814|gb|FQ454424.1|FQ454424
EST:     CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|349811478|gb|FQ409474.1|FQ409474
EST:     CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|18458011|gb|BM436289.1|BM436289
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: gi|29785366|gb|CB342287.2|CB342287
EST:     GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA                         TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA