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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGCACAAGGAAGAAGAAAGAGTTGCAGAAGGCTAAAGAATTCTTGGAGACATTTAAGTCATCTAGAAACGCTCAGTTCTATGATGGGAAACACAAATAgtaagtagacaataccttttacattcatactaaccataactaattcttttggagtccaatgacaatcataggttttataattattcactgtgttaggttcattaaag

Basic information

species Vitis vinifera
transcript Vv13s0019g04730.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G446108_T03 (Zea mays), 5'ss of exon 6
-ACCGCACAAGGAAGAAGAAAGAGTTGCAGAAGGCTAAAGAATTCTTGGAGACATTTAAGTCATCTAGAAACGCTCAGTTCTATGATGGGAAACACAAATAgtaagtagacaataccttttacattcatactaaccataactaattctt-ttggagtccaatgacaatcataggttttataattatt-cactgtgttaggttcattaaag
 ||    |||||||||||   ||| ||||||||| || ||| |||||||| ||||| ||||||||||  ||||| || ||| |||||||||| || || | ||||| |||   |   |  |    || |  |  ||  | | ||||  | ||  | |   ||  |  ||||  |    |   | ||  |    | |   |||        
GACAAGGCAAGGAAGAAGGCGGAGCTGCAGAAGGGTAGAGAGTTCTTGGAAACATTCAAGTCATCTAAGAACGCCCAATTCCATGATGGGAAGCATAA-TGgtaagaagaggttcattaatgtgctccttttctccgcatccaatttatgtttcaattttatctcg-tcatgtgcaggacgttcatgaccgaatatgcagtt--------

upper sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G446108_T01 (Zea mays), 5'ss of exon 6
-ACCGCACAAGGAAGAAGAAAGAGTTGCAGAAGGCTAAAGAATTCTTGGAGACATTTAAGTCATCTAGAAACGCTCAGTTCTATGATGGGAAACACAAATAgtaagtagacaataccttttacattcatactaaccataactaattc-ttttggagtccaatgacaatcataggttttataattattcactgtgttaggttcattaaag
 ||    |||||||||||   ||| ||||||||| || ||| |||||||| ||||| ||||||||||  ||||| || ||| |||||||||| || || | ||||| |||   |   |  |    || |  |  ||  | | ||||  | ||  | |   ||  |  ||||  |                                   
GACAAGGCAAGGAAGAAGGCGGAGCTGCAGAAGGGTAGAGAGTTCTTGGAAACATTCAAGTCATCTAAGAACGCCCAATTCCATGATGGGAAGCATAA-TGgtaagaagaggttcattaatgtgctccttttctccgcatccaatttatgtttcaattttatctcg-tcatgtgcag--------------------------------

upper sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G28000.1 (Glycine max), 5'ss of exon 6
ACCGCACAAGGAAGAAGAAAGAGTTGCAGAAGGCTAAAGAATTCTTGGAGACATTTAAGTCATCTAGAAACGCTCAGTTCTATGATGGGAAACACAAATAgtaagtagacaataccttttacattcatactaaccataactaattcttttggagtccaatgacaatcataggttttataattattcactgtgttaggttcattaaag
||    ||||| ||||| ||||| ||   || ||||||||||| |||||||| ||||| || || ||||| ||||| |||||||||||||| ||||| |||||||||        | | ||   ||   | |   || ||  ||       | |   ||| |  ||  ||  | | | ||| || |||     | ||||        
ACAAGTCAAGGCAGAAGGAAGAGATGTTTAAAGCTAAAGAATTTTTGGAGACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactgctattcatctatgatctacccatgaattacatatagaaactgggcttaattaacattttatctctcagaat-atacacctctcttggtttt------