Sequence
atgc intronic sequence ATGC exonic sequenceTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTGgtatccctctctctcagttggatcattaagtcaattttcatgtctttaaatattgatctagttatgtgtcagtgttctaattcttcttccttctgttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G35270.1 (Glycine max), 5'ss of exon 6
TATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTGgtatccctctctctcagttggatcattaagtcaattttcatgtctttaaatattgatctagttatgtgtcagtgttctaattcttcttccttctgttcag
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TATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccctattttgt---ggtctttgctggcactaatttgcagatatgtactgatagtgtttcttacctaaggatatgttcgtctgtctcttgaccag
upper sequence: Vv13s0019g04670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G32280.1 (Glycine max), 5'ss of exon 6
TATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTGgtatccctct-ctctcagttggatcattaagtcaattttcatgtctttaaatattgatctagttatgtgtcagtgttctaattcttcttccttctgttcag
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TATTATGAAGGAAATCGTGCAAAATGGTTGGCTATGAGGTCTGGGCAGAGCTACCGGCATCCATTCAACATTGGCGCATACAAGAACATTACTTTGgtctctccctattctgtggtctttactggcattagtttgcacatatgtacttatggtgtttcttacctaacattcatctgtttatttatcag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458245|gb|CD799419.1|CD799419EST: AGCTATCGTCATCCATTCAACGTTGGTGTTTACACAAAAATATTACCCTG GTATTAGGTCCAAACATGCTCAAGTGGCTATGTCCCTCATCAGTAGGCCAT
genomic: AGCTATCGTCATCCATTCAACGTTGGTGTTT--ACAAAAATATTACCTTGgtatccctct ... ttctgttcagGTATTAGGTCCAAACATGCTCAAGTGGCTATGTCCCTCATCAGTAGGCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTGgtatccctctctctcagttggatcattaagtcaattttcatgtctttaaatattgatctagttatgtgtcagtgttctaattcttcttccttctgttcag
- - - - - - - - - - - - - - - - - - - - - - - AGAGCT