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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaaaccaacatatttcacatctctttctcatatcatccactggacttgacaaattgtcattaacag

Basic information

species Vitis vinifera
transcript Vv13s0019g04590.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g51100.1 (Oryza sativa), 5'ss of exon 5
GTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaagga------------aaaaccaacat--atttcacatctctttctcatatcatccactg-gacttgacaaattgtcattaacag
||||||||||| |||||  ||||||| ||||| || ||||  || ||||||||||| ||||| || |||||||  |             || |||  ||  | | || | | |    ||| || ||   ||  || ||| |      |||| |||||
GTTATGCAATTCCTTGAAGCACAAGAGTATAGCATGTTTAGACGCATTGTTTTTGACACTGCTCCAACGgtaactatcctatatatgtgaatccacaattgactccata-cgcacattcacattattacctatgatttgtct--ccctcatcaacag

upper sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G105539_T01 (Zea mays), 5'ss of exon 5
GTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaa-accaacatatttcacatctc---ttt--------ctcatatcatccactggacttgacaaattgtcattaacag
||||||||||| |||||  |||||||||| || || |||| ||| ||||| ||||| ||||| || |||||||  |    ||||   | | ||| || |    | |         ||| || |||  ||    ||  | || | || || ||||
GTTATGCAATTCCTTGAAGCACAAGAATACAGCATGTTTAGTCGCATTGTATTTGACACTGCCCCTACGgtaataaccctaccattgtgtatcaaatgttgaatctacatgggagtcacattatcagctattattcgctaact-tctttgacag

upper sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 6
GTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaaacca-------acatatttcacatctctttc---tcatatcatccac-tggacttgacaaattgtcattaacag
||||||||||||||||| ||||| |||||||| || ||||||||||| || |||||||| ||||| ||||| || ||||| |        | |||||||||||| | ||    | ||| |||   | | |  || ||| ||  ||   |||||
GTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaaagctgatagttatatatttcacatcacctttgttttataacattatcataggatttacacatgttcccaaacag

upper sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G35320.1 (Glycine max), 5'ss of exon 6
GTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaaac-------caacatatttca---catctctttctcatatcatccactggacttgacaaattgtcattaacag
||||| |||||||| || ||||| |||||||| || ||||||||||| || |||||||| ||||| ||||| || |||||          | ||||||||   || || | | |  || |||    | |  || |   ||  |  |||||||
GTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaaagatgatagttatatatttcagatcacctttgttttttagcatttcataggatttatgcatgttacttaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349820813|gb|FQ404198.1|FQ404198
EST:     CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACG                         GGTCATACACTGCGGCTTTTTTCCTTACCA
genomic: CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaa ... tcattaacagGGTCATACACTGCGGCTTTTGTCCTTACCA
EST: gi|349812310|gb|FQ406331.1|FQ406331
EST:     CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACC                         GGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGA
genomic: CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaa ... tcattaacagGGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGA
EST: gi|349827879|gb|FQ422747.1|FQ422747
EST:     CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACG                         GGTCATACACTGCGGCTTTT
genomic: CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaa ... tcattaacagGGTCATACACTGCGGCTTTT
EST: gi|349822994|gb|FQ399973.1|FQ399973
EST:     CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACG                         GGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATT
genomic: CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaa ... tcattaacagGGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATT
EST: gi|351025874|gb|FQ427886.1|FQ427886
EST:     CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACG                         GGCCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATT
genomic: CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaa ... tcattaacagGGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATT
EST: gi|351029701|gb|FQ427541.1|FQ427541
EST:     CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACG                         GGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATT
genomic: CACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaa ... tcattaacagGGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATT