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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagctacaatactccaccaatttttttttttttggaa...

Basic information

species Vitis vinifera
transcript Vv13s0019g04480.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G135132_T01 (Zea mays), 5'ss of exon 6
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagc-tacaatactccaccaatttttttt----tttttggaa
| ||| ||   ||||||||||||||| || ||||| |||||||| || || |||||||||||||| ||||  |||     |  || | |||    | |   ||  ||   |  ||   ||| |  || | ||  | | ||  |||  || | | ||   |     | ||| | 
GCTCATTACTATGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtcttcataccagtttttttgcac--aacttctgccgttgg--tgtggtttttacattacgttcaccacttaacgactattaaataggactattgca-

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G089767_T01 (Zea mays), 5'ss of exon 4
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgag-ttccta----acccacaaatttggaagaatgt---aatatccatcagtgagatgtagaattcaaatagctacaatactccaccaatttttttttttttggaa
|  || |||| ||||||||||| ||| ||||| || |||||||| ||||| ||||||||||| || ||||  | || |||    | |  ||  |    ||| ||||   ||| |  ||||||    |  | | |  ||  ||                                  
GCCCATTATCATGAGGATGAGAATGCTCCAACGGGCACATGTGCTGTTTGTGTTGTTGGTGGAGAAAGgtatgcttgctacagtatcttcatttcaacaagcatgtcttaattttaatcagttgccttaaaactgtaaccag----------------------------------

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 6
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagctacaatactccaccaattttt-----ttttttttggaa
| ||| ||    |||||||||||||| || ||||| |||||||| || || ||||||||||| || ||||  |||    |   || | ||| |     | ||| |||     || || ||| |  || | || |     |   |  |   | | ||       | ||||| | 
GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtctaaataccagttttgttt--tataacatctgct-gtcag-tgttgtttttacattgtgttcactgtttagtgactattaaataggtcttttgca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137599|gb|CB922937.1|CB922937
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71864075|gb|DT013130.1|DT013130
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGACGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110687648|gb|EE065296.1|EE065296
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71863003|gb|DT012058.1|DT012058
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110728204|gb|EE103570.1|EE103570
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|351023138|gb|FQ432521.1|FQ432521
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|351023529|gb|FQ432912.1|FQ432912
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|351038074|gb|FQ460816.1|FQ460816
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|352794243|gb|FQ479485.1|FQ479485
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71860280|gb|DT009335.1|DT009335
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|30132011|gb|CB917350.1|CB917350
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71861873|gb|DT010928.1|DT010928
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|161716356|gb|FC066867.1|FC066867
EST:     GAGACTGCACCAACTGTTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110693709|gb|EE070177.1|EE070177
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|349824265|gb|FQ417652.1|FQ417652
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|352794240|gb|FQ479482.1|FQ479482
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110391898|gb|EC956929.1|EC956929
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71859146|gb|DT008201.1|DT008201
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|351028349|gb|FQ427245.1|FQ427245
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110708040|gb|EE085129.1|EE085129
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71860232|gb|DT009287.1|DT009287
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71865109|gb|DT014164.1|DT014164
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71864474|gb|DT013529.1|DT013529
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|351013485|gb|FQ425516.1|FQ425516
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110703696|gb|EE080770.1|EE080770
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71863288|gb|DT012343.1|DT012343
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|27581929|gb|CB004624.1|CB004624
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|351026422|gb|FQ428434.1|FQ428434
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110689258|gb|EE065335.1|EE065335
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|352786996|gb|FQ476029.1|FQ476029
EST:     GAGACTGCACCAACTGGTACCTGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCCACTTATCGGCTGCAAATTGCTACAAGTCCCAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|161712338|gb|FC061663.1|FC061663
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGACCATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71862297|gb|DT011352.1|DT011352
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|30125628|gb|CB910967.1|CB910967
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|351038237|gb|FQ460929.1|FQ460929
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|352786981|gb|FQ476014.1|FQ476014
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110685346|gb|EE063661.1|EE063661
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71860319|gb|DT009374.1|DT009374
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110685881|gb|EE062990.1|EE062990
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71862322|gb|DT011377.1|DT011377
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|30129600|gb|CB914939.1|CB914939
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71855237|gb|DT004292.1|DT004292
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATC
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATC
EST: gi|110726165|gb|EE101710.1|EE101710
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110715240|gb|EE093065.1|EE093065
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|30129081|gb|CB914420.1|CB914420
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|110698283|gb|EE075646.1|EE075646
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|71864037|gb|DT013092.1|DT013092
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGACGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
EST: gi|46917497|gb|CN546826.1|CN546826
EST:     GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG                         GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagctacaatactccaccaatttttttttttttggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaagaa
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccacc