Sequence
atgc intronic sequence ATGC exonic sequenceGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagctacaatactccaccaatttatttatttttggaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G135132_T01 (Zea mays), 5'ss of exon 6
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagc-tacaatactccaccaat-ttattta---tttttggaa
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GCTCATTACTATGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtcttcataccagtttttttgcac--aacttctgccgttgg--tgtggtttttacattacgttcaccacttaacgactattaaataggactattgca-
upper sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G089767_T01 (Zea mays), 5'ss of exon 4
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgag-ttccta----acccacaaatttggaagaatgt---aatatccatcagtgagatgtagaattcaaatagctacaatactccaccaatttatttatttttggaa
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GCCCATTATCATGAGGATGAGAATGCTCCAACGGGCACATGTGCTGTTTGTGTTGTTGGTGGAGAAAGgtatgcttgctacagtatcttcatttcaacaagcatgtcttaattttaatcagttgccttaaaactgtaaccag----------------------------------
upper sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 6
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagc-tacaatact---ccaccaatttatttatttttggaa
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GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtctaaataccagttttgttt--tataacatctgct-gtcag-tgttgtttttacattgtgttcactgtttagtgactattaaataggtcttttgcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110425226|gb|EC991608.1|EC991608EST: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTT-GTGGCGAGAG GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
genomic: GAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcct ... atttatgcagGTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagctacaatactccaccaatttatttatttttggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccacc