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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGACCGACAATCTTGGTTCAGAGATTGTCGGAAACTGGAAGTCTTCGCCAAGTTTCCAGCGGGAAATGGGGGAATACTTGAACTGATATACATGCAAgtgagcagaagtggttgaatgttgttactttattttcttgcatctgggtttacagcagcatagtatggaggtttaaccttttgatttccttaataaagcactaatattttctttcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04320.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G042250_T03 (Zea mays), 5'ss of exon 7
CAAAGACCGACAATCTTGGTTCAGAGATTGTCGGAAACTGGAAGTCTTCGCCAAGTTTCCAGCGGGAAATGGGGGAATACTTGAACTGATATACATGCAAgtgagcagaagtggttgaatgttgttactttattttcttgcatctgggtttacagcagcatagtatggaggtttaaccttttgatttccttaataaagcactaatattttctttcag
 ||||| || |  ||||||||| | |||||||| |  |||||||| ||  | | ||||||||| ||||||||||||| | ||||||| || |||||||| ||| |||              ||  || |||  ||  |||  | ||  | | |||||     |       || | |||  || || |   |  |||   | |  ||| | |      
GAAAGATCGTCCCTCTTGGTTCCGTGATTGTCGAAGTCTGGAAGTGTTTACAATGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATCTACATGCAGgtgggca--------------tttctattttgcttcattggttatgtttcttcagcatttctggtgaactgtatgacccatt-atgtggatggtaa--tatttgtatgtgcag----

upper sequence: Vv13s0019g04320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G109987_T01 (Zea mays), 5'ss of exon 7
CAAAGACCGACAATCTTGGTTCAGAGATTGTCGGAAACTGGAAGTCTTCGCCAAGTTTCCAGCGGGAAATGGGGGAATACTTGAACTGATATACATGCAAgtgagcagaagtggttgaatgttgttactttattttcttgcatctgggtttacagcagcatagtatggaggtttaaccttttgatttccttaataa-agcactaatattttctttcag
 ||||| || |  ||||||||| | ||||| || |  || ||||| ||  | | ||||||||| ||||||||||||| | ||||||| || |||||||| ||| |||              || ||| |||  ||  |||    ||  | | |||||      | ||| |   |       | ||| | |  ||   |  | |  ||| || || |||
GAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaa-------------tttttattttgcttcattgttgatgtttcttcagcatt----tctggtgagctgcatgactcattacgtggatggtaatatttgtatgttattgcag