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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGATATCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattgttcacagaattttggtatgatctccaaaagggttttacattcttggacaatttttattcaatagtgttctcatgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04310.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051564|gb|FQ450116.1|FQ450116
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGTACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|351038272|gb|FQ460964.1|FQ460964
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|351046934|gb|FQ454544.1|FQ454544
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|45771650|gb|CN007502.1|CN007502
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349809523|gb|FQ414413.1|FQ414413
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|351038723|gb|FQ464589.1|FQ464589
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|110366533|gb|EC930443.1|EC930443
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349809479|gb|FQ414369.1|FQ414369
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349811587|gb|FQ409583.1|FQ409583
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349822732|gb|FQ398119.1|FQ398119
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349814723|gb|FQ409946.1|FQ409946
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|110426990|gb|EC993420.1|EC993420
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|32459794|gb|CD800968.1|CD800968
EST:     GCTCCTTTCTTATT                         ATCTTTGAAAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAA
genomic: GCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTG--AAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAA
EST: gi|351028489|gb|FQ444770.1|FQ444770
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGATATCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattgttcacagaattttggtatgatctccaaaagggttttacattcttggacaatttttattcaatagtgttctcatgcag

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