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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGAACTTCTTGGCCGTCCAGGCATACTGAACGCATGGGAAACAGTAGAGTCCTCATGGGTATCATGCACTCTACCAGGCCTCATTATGGTTTGCAGgtgtgttaaatttttgttgtgtttgtaattgtctcagctatatttattggattgctagtctgtcaccttttatttttgccttcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04170.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G416386_T01 (Zea mays), 5'ss of exon 6
--GAATGGAACTTCTTGGCCGTCCAGGCATACTGAACGCATGGGAAACAGTAGAGTCCTCATGGGTATCATGCACTCTACCAGGCCTCATTATGGTTTGCAGgtgtgttaaatttttgttgtgtttgtaattgtctcagctatattta-ttggattgctagtctgtcaccttttatttttgccttcag
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TGGTGGGGAACTATCCAACA--TAGGACATGCTTGTGAGTCAGATGATAGCCGAGTTATCATGGGCATCAGGCACTCTAGCAGGCCTCATTATGGAGTGCAGgtatcctagtttatcctattcggtg-atttctctatgttgtagtcagtttttcttacacatgattgccctttaacccag-------