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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTACCTCAGATACCTACAGAGAAAACCAGAAACAAGACTTAAGGGTGACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagtgtttcttgtgaaataataattttgaaaagtgatgctgctgttgctttctcttcttctgacgctgtttcttgatggttgacatgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04120.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G35620.1 (Glycine max), 5'ss of exon 6
GGATTTACCTCAGATACCTACAGAGAAAACCAGAAACAAGACTTAAGGGTGACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaa--tctagtgtttcttgtgaaataata-attttgaaaagtgatgctgctgttgctttctcttcttctgacgct---gtttcttgatggttgacatgcag--------
|||||||||||||||||   ||||| ||||||||||||| ||| ||||||||||||||||| || |||||||||||||| ||||||||||| ||| ||||||||  | | || ||  ||      ||||| ||| |||| | | |   | || |||   ||| ||    | |   |    ||| ||  |  ||    |||          
GGATTTACCTCAGATACTGGCAGAGGAAACCAGAAACAAAACTCAAGGGTGACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtggttttagtttgcctgtaatatattatgaagaattactat-ctcttgtaatctttttaaataattttcatattttttattattttttttgcttccttgtag

upper sequence: Vv13s0019g04120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G31930.1 (Glycine max), 5'ss of exon 6
GGATTTACCTCAGATACCTACAGAGAAAACCAGAAACAAGACTTAAGGGTGACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCT-GAATTTCTAAGgtaa--tctagtgtttcttgtgaaataata-attttgaaaagtgatgctgctgttgctttctcttcttctgacgct-gtttcttgatggttgacatgcag-------------------
           ||||||   ||||| ||||| ||||||| || |||||||||||||||||| || |||||||||||||| ||||| ||  || ||| ||||| ||  | | || ||  ||      ||||| ||| |||  | | |    ||| | |   ||| ||      ||  |  ||| ||  |  ||    |||                     
-----------AGATACTGGCAGAGGAAACCCGAAACAAAACATAAGGGTGACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTTCCCAGAGTTTTTAAGGCAAGATATGgttttagtttgcctgtaatatattatgatgaattacaaggctctggtaatctttttaaacaacttttatttttttttattttttttgctaccttgtagaccggttatag

upper sequence: Vv13s0019g04120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G26110.1 (Glycine max), 5'ss of exon 6
GGATTTACCTCAGATACCTACAGAGAAAACCAGAAACAAGACTTAAGGGTGACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatct-agtgtttcttgtgaaataataattt-tgaaaagtgatgctgctgttgctttct---cttcttctgacgctgtttcttgatg-----gttgacatgcag
||||||| || ||||||   ||||| ||||||||||| | || ||  |||||||  ||||| || ||||| ||||| |||||||| || |||||| ||||||||| | ||  |||  | || |  || |||   |||  |||     |  ||  |||||||    ||      || ||  || || |||     | || | || ||
GGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACTAAACATAGAGGTGACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcagcttttagtttgcagcaaaaataagtgactagttgcagtattg--gctttctagattttaagaaactcttattttttatgtttttgctgccttgtag

upper sequence: Vv13s0019g04120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G07160.2 (Glycine max), 5'ss of exon 6
GGATTTACCTCAGATACCTACAGAGAAAACCAGAAACAAGACTTAAGGGTGACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatct-agtgtttcttgtgaaataataattt-tgaaaagtgatgctgctgt-tgctttctcttcttctgacgctgtttcttgat--ggttgacatgcag
||||||| || ||||||   ||||| ||||||||||| | || ||  ||||| |  ||||| || ||||| ||||| ||||||||||| |||||| ||||||||| | ||  |||  | || |  || |||   |||  |||  |  |  ||| ||  |    ||      || || |||  || |   | || | || ||
GGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACTAAACATAGAGGTGATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGgtaatttcagcttttagtttgcagcaaaaataagtgattagttgtagtattgtctgtctagattttaagaaactcttttttatgtttttgctgccttgtag

upper sequence: Vv13s0019g04120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G07950.1 (Arabidopsis thaliana), 5'ss of exon 6
GGATTTACCTCAGATACCTACAGAGAAAACCAGAAACAAGACTTAAGGGTGACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatcta-gtgtttcttgtgaaataataattttgaaaa-----gtgatgctgctgttgctttctcttcttctgacgctgtt-tcttgatggttgacatgcag
|| | |||||||| ||||||||||| | |||||||||||  || |  ||||| ||||||||||| ||||| |||||||| || || |||||| |||| |||| | | |  | | ||   |   |   || ||| ||           |  |   | |||| |  | |  |  ||    | || | ||      | | ||||||
GGTTATACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGACTTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGgtgaacgacatttctccctttttactgtactttcgagtttgcccacaaatcaattcttgcctcatatgttgttggtaattttgtttttcaaaataaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408617|gb|EC974254.1|EC974254
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|32460792|gb|CD801966.1|CD801966
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110689183|gb|EE065183.1|EE065183
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGA
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGA
EST: gi|110388511|gb|EC953269.1|EC953269
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110418019|gb|EC984128.1|EC984128
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110381307|gb|EC946633.1|EC946633
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|351037220|gb|FQ457053.1|FQ457053
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAACTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGATGATTATGTTGTGGAAA
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAA-
EST: gi|22008865|gb|BQ793899.1|BQ793899
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|30255752|gb|CB971884.1|CB971884
EST:     GACCCAGGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110389130|gb|EC953946.1|EC953946
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|349828743|gb|FQ418478.1|FQ418478
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|351017619|gb|FQ435972.1|FQ435972
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         AACAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGT
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGT
EST: gi|110402278|gb|EC959746.1|EC959746
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG