Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGTGTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGTAGGGAGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttttctatgtcattctctctctctctcacacacacgcgcgcacatggctcttttgttaaaatgatgcattattgctagagcttttgtagatcactgactttcgtcgttgtctttgcctttgtctgcttttctaag

Basic information

species Vitis vinifera
transcript Vv13s0019g03870.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os12g01240.1 (Oryza sativa), 5'ss of exon 6
AGATGGTGTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGTAGGGAGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttttctatgtcattctctctctctctcacacacacgcgcgcacatggctcttttgttaaaatgatgcattattgctagagcttttgtagatcactgactttcgtcgttgtctttgcctttgtctgcttttctaag
|||||||   ||||| ||||| ||||| ||||| |||||||||||  | |||||||| ||||||||||| || ||| | || ||||| ||  | |||||||||      || |  ||  || | | | ||| |    || || |    |  ||| | | ||     |   ||   || |||   ||    | | ||    ||| ||||  |                               
AGATGGTCCAAAGGGCTTCTTCCGTGGCACTGGGGCCACTCTTTGCCGAGAGGTTCCTTTCTATGTTGCTGGAATGTGTCTTTATGCAGAAGCTAAAAAGgta------ttgtgagttcttat-tgtttctttggaccatac-cttaaaattggttttcttcc---atctatattttgttgactgaaaggt-gcagtgagctgcctttgttt------------------------------

upper sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G003033_T01 (Zea mays), 5'ss of exon 6
AGATGGTGTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGTAGGGAGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttttctatgtcattctctctctctctcacacacacgcgcgcacatggctcttttgttaaaatgatgcattattgctagagcttttgtagatcactgactttcgtcgttgtctttgcctttgtctgcttttctaag
||||||    |||||||| ||||| || ||||| ||||| || ||| | |||||||| ||||||||||| || ||| | |||||||| ||  | || ||||||       | | | |   |       | || |  ||   |      |  ||||  |      |||    |   || ||   |   |   |     ||  | |||  |                                 
AGATGGCCCAAAGGGTTTTTTTCGCGGCACTGGGGCCACACTGTGTCGCGAGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcaatttgtattgattctgtggtttcaccaaccttca-----aagtggcattcac---aaatccctatgttgttaacaagtcagctacttttc-ttaactacc---------------------------------

upper sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G146378_T02 (Zea mays), 5'ss of exon 2
AGATGGTGTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGTAGGGAGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttttctatgtcattctctctctctctcacacacacgcgcgcacatggctcttttgttaaaatgatgcattattgctagagcttttgtagatcactgactttcgtcgttgtctttgcctttgtctgcttttctaag
||||||    ||||| || |||||||| ||||| ||||| || ||| | |||||||| ||||||||||| || ||| | |||||||| ||  | || ||||||      || |       |  ||   |    || ||   |      |  ||||  |      |||    |   || ||   |   |   |     ||  | |||  |                                 
AGATGGCCCAAAGGGATTTTTTCGTGGCACTGGGGCCACACTGTGTCGCGAGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcgttttgaactgattcctggtttcaccagaccttca-----aagtggcattcac---aaatccctatgttgttaacaagtcagctaccattc-ttaactacc---------------------------------

upper sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G31800.1 (Glycine max), 5'ss of exon 7
AGATGGTGTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGTAGGGAGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttttctatgtcattctctctctctctcacacacacgcgcgcacatggctcttttgttaaaatgatgcattattgctagagcttttgtagatcactgactttcgtcgttgtctttgcctttgtctgcttttctaag
 |||||| ||| ||||||||||||||| || || || ||  | ||  | ||||||||||| |||||||| ||||||||||| ||||| || || ||||||||  |   |||| |||  || |  | |   |    |        |   |      |    | ||  | | ||||||| |  ||| |   | || |||    ||                                       
GGATGGTCTTAGGGGTTTCTTTCGTGGAACCGGAGCTACCTTGTGCCGCGAGGTTCCATTTTATGTTGCTGGCATGGGGCTTTATGCTGAATCTAAAAAGgtgtgtaatttccatg--atccagtgtgcttgat-cttgtgtttgtcaatggaatttacattttttatttatgcattgtaactataatatctg-agact-ttggt-------------------------------------

upper sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G35730.1 (Glycine max), 5'ss of exon 7
AGATGGTGTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGTAGGGAGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttttctatgtcattctctctctctctcacacacacgcgcgcacatggctcttttgttaaaatgatgcattattgctagagcttttgtagatcactgactttcgtcgttgtctttgcctttgtctgcttttctaag
 |||||| ||| ||||||||| ||||| || || || ||  | ||  | ||||||||||| |||||||| ||||||||||| ||||| || || ||||||||  |   |||| |||  || |  | |   |    |        |   |      |    | ||  | | |||||||||   || |   | | |  | |  ||                                       
GGATGGTCTTAGGGGTTTCTTCCGTGGAACCGGAGCTACCTTGTGCCGTGAGGTTCCATTTTATGTTGCTGGCATGGGGCTTTATGCTGAATCTAAAAAGgtgtgtaatttccatg--atccagtgtgcttgat-cttgtgtttgttaatggaatttacattttttatttatgcattataattataatatctctgaaactttg---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30328516|gb|CD011778.1|CD011778
EST:     AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAG                         GTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
genomic: AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttt ... cttttctaagGTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
EST: gi|30135404|gb|CB920742.1|CB920742
EST:     AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAG                         GTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
genomic: AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttt ... cttttctaagGTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
EST: gi|30134663|gb|CB920001.1|CB920001
EST:     AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAG                         GTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
genomic: AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttt ... cttttctaagGTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
EST: gi|161712726|gb|FC062298.1|FC062298
EST:     AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAG                         GTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
genomic: AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttt ... cttttctaagGTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
EST: gi|110375503|gb|EC940493.1|EC940493
EST:     AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAG                         GTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
genomic: AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttt ... cttttctaagGTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
EST: gi|30328837|gb|CD012099.1|CD012099
EST:     AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAG                         GTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA
genomic: AGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttt ... cttttctaagGTTGTCCATAAGCTTTTGGGGAGGGAACTGGAGCCATGGGAAACAATTGCA