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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGGCTTGCCCACATGCTTCCGGGGCTGCTGCCTATATCAAATCATTTCACCCAACATGGTCTCCTTCTGCTATTAAGTCTGCTCTAATGACAACTGgtactggtttgatctataatccaaaagcatctttaaaataaaaacattagtaagtactatgtttttcgaaagtaactgaattggtacatgttcagtttttctacattttgagtttctgttattatttgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g02640.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G34630.1 (Glycine max), 5'ss of exon 8
TCCATGGCTTGCCCACATGCTTCCGGGGCTGCTGCCTATATCAAATCATTTCACCCAACATGGTCTCCTTCTGCTATTAAGTCTGCTCTAATGACAACTGgtactggtttgatct--ataatccaaaagcatctttaaaataaaa---acattagtaagtactatgtttttcgaaagtaactgaattggtacatgttcagtttttctacat--tttgagtttctgttattatttgcag
|| |||||||| ||||||| ||| ||||| || || ||| | ||||||||||| ||||||||||||||| ||||||||   || |||||||||||||| |||  |  |   |     |||| | |  ||    |  | |    ||     ||| | |  |   ||  |  ||  |  |||||   |  | |||| | ||| |   | || |  |   |    |  |  |   | ||||
TCAATGGCTTGTCCACATGTTTCTGGGGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaataagcgatgagtgaatgcacatctgaattagtatttgaatttggaatcatactcttagctaactctttgtgcacat-tgcagctaaacaacttagtcccaagacccatcttc--tggcag

upper sequence: Vv13s0019g02640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
TCCATGGCTTGCCCACATGCTTCCGGGGCTGCTGCCTATATCAAATCATTTCACCCAACATGGTCTCCTTCTGCTATTAAGTCTGCTCTAATGACAACTGgtactggtttgatctataatccaaaagcatctttaaaataaaaacattagtaagtactatgtttttcgaaagtaactgaattggtacatgttcagtttttctacattttgagtttctgttattatttgcag
|| |||||||| ||||||| ||| || || || || ||| | ||||||||||| ||||||||||||||| ||||||||   || |||||||||||||| |||  |  |  ||  |  |||    |   ||     |  | |  |  | |   |||| |    |||  | ||  |      | | ||  | |||  ||| |  |||||                        
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataata-gaaatgaaat---gagtgatgacacatctcatgatctcaactagtattggaattt--ggaatcatactcttggctaactcttc--tttgtgcacattgcag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359441|gb|EC920928.1|EC920928
EST:     TCACCCAACATGGTCTCCTTCTGCTATTAAGTCTGCTCTAATGACAACTG                         CTTCTCCTATGAGGGGTGAAATTAATACCGATCTGGAGTTTGCATACGGAT
genomic: TCACCCAACATGGTCTCCTTCTGCTATTAAGTCTGCTCTAATGACAACTGgtactggttt ... ttatttgcagCTTCTCCTATGAGGGGTGAAATTAATACCGATCTGGAGTTTTCATACGGAT