Sequence
atgc intronic sequence ATGC exonic sequenceATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGgtgagtagcctgtgttttctgaaagatccttctgctaaattttgtcaacttggtttatagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G42380.1 (Glycine max), 5'ss of exon 12
ATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGgtgagtagcctgtgttttctgaaagatcct----tctgctaaattttgtcaacttggtttatagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcag
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ATGGGTAACAAGGGTGCCTTTATTCGATTTGAAGCGCCTGATTTGAAACCTAACATTGTCACATTTTCAGCGGTGgttagtatcttttatcttttggagtatgctctgttatatcatgttttgtca-ctcatcctccacacacaaaaaaatg-aatatgttctttctttgttttatt--------------
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G12440.1 (Glycine max), 5'ss of exon 12
ATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGgtgagtagcctgtgttttctgaaagatccttctgctaaattttgtcaacttggtttatagatggtta--aaagtgtaacttgtcc-tcttatttctttttgtgatgaaattgcag-----------------------------------------------------------------
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-TGGGTAACAAGGGTGCCTTTATTCGATTTGAAGCGCCTGATTTGAAACCTAACATTGTCACATTCTCAGCGGtggttagtaccttttatgtt-tggagtatgcta-tgttatatcatgttttgtcatcct-caaaaaattaccaatatgttctttattgatttcatttatgaccgtgcatatctttcaatctgtattgttatatggggttgacatactttccttgtgtctggtttactttgttgaatatgcagc
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G42810.2 (Arabidopsis thaliana), 5'ss of exon 13
ATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGgtgagtagcctgtgttttctgaaagatccttctgctaaattttgtc---aacttggtttatagat-ggttaaaa---gtgtaacttgtcctcttatttctttttgtgatgaaattgcag
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ATGGGTAATAAGGGAGCCTTCATTCGTTTTGAAGCTCCTGATATGAAGCCAAACATTGTTACATTCTCAGCAGTGgtgagtgtagtcc-tcttacatagcattgttcttatgaatgtttcacagaagatagttcacggtttgatttagactcattcaaacactcttctaattttctgatattgttatttcccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110380672|gb|EC945956.1|EC945956EST: GTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTG CCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATG
genomic: GTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGgtgagtagcc ... gaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGgtgagtagcctgtgttttctgaaagatccttctgctaaattttgtcaacttggtttatagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcag
- - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGC