1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatgcttcctacttcatttgtttgtttgggtttttttttttttttctccttcttgttctgagagtaatatttgcatttcaacacactcagctgc...
species | Vitis vinifera |
transcript | Vv12s0142g00360.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|110726323|gb|EE102002.1|EE102002
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|110715529|gb|EE093682.1|EE093682
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|110730325|gb|EE107273.1|EE107273
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|30298144|gb|CB974938.1|CB974938
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAGGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|30135782|gb|CB921120.1|CB921120
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTACATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|110710338|gb|EE086596.1|EE086596
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|30133145|gb|CB918484.1|CB918484
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTACATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|30298778|gb|CB975572.1|CB975572
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGEST: gi|110726263|gb|EE101892.1|EE101892
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
EST: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGG GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
genomic: AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatg ... ccttgtgcagGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGgtaaataatgcttcctacttcatttgtttgtttgggtttttttttttttttctccttcttgttctgagagtaatatttgcatttcaacacactcagctgc
- - - - GCTGTT
- - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagtaa