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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAAAGTATGTTCCAGTTCCTGTAGTGCCTCAGAGTGAAAGGTTCCTTTTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtctcattcttgcaagttgtccttgttacatatgtggaattgcatgagattcattgtcatcaatcatgcctgctatagacaccaattggtggaa...

Basic information

species Vitis vinifera
transcript Vv12s0142g00170.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G19120.1 (Glycine max), 5'ss of exon 10
GCATAAAGTATGTTCCAGTTCCTGTAGTGCCTCAGAGTGAAAGGTTCCTTTTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtctcattcttgcaagtt-gtccttgttacatatgtggaattgcatgagattcattgtcatcaatcatgcctgctatagacaccaattggtggaa--
| || ||||||||||| |||||| | ||||| || ||||||||||||||||| ||  |||||||||| ||||||||||| |||||||| || |||||||||||    |||||    ||    ||    | || ||  | ||| | |||  || ||      |   | |  | |     | | ||          ||   |   
GTATCAAGTATGTTCCTGTTCCTATGGTGCCACAAAGTGAAAGGTTCCTTTTTCGGCGAGTCTGCCCCAAAAGCTACCATATATTTCGTTGTATTGCCAGgtat---tctcacatgtgtttcttcacacctgctatgtgtgtagtattagatcagtggtgattcaaacctttacattcgttctaagtggtctaaggaaaagtt

upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G05880.1 (Glycine max), 5'ss of exon 9
GCATAAAGTATGTTCCAGTTCCTGTAGTGCCTCAGAGTGAAAGGTTCCTTTTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtctcattcttgcaagttgtccttgttacatatgtggaattgcatgagattcattgtcatcaatcatgcctgctatagacaccaattggtggaa-------
| || |||||||||||||||||| | ||||  || ||||||||||| ||||| ||  |||||||||| ||||||||||| |||||||| || || ||||||||    || |||| |       |||  |  ||| ||  ||||   | ||       | ||  |||  ||  |   || | ||   |  | |||   | |       
GTATCAAGTATGTTCCAGTTCCTATGGTGCTGCAAAGTGAAAGGTTTCTTTTTCGGCGAGTCTGCCCCAAAAGCTACCATATATTTCGTTGTATCGCCAGgtattc-tcacattttctttgtgtgtagt-attagatcagtggtgattcaaa-----cctttacattcattctaggtggtctaaggaaaagttgaatggattcttaa

upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G07720.1 (Glycine max), 5'ss of exon 7
GCATAAAGTATGTTCCAGTTCCTGTAGTGCCTCAGAGTGAAAGGTTCCTTTTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtctcattcttgcaagttgtcct-tgttacatat-gtggaattgcatgagattcattgtcatcaatcatgcctgctatagacaccaattggtggaa
| || |||||||||||||||||  | |||||||| ||||||||||||||||| ||  |||| ||||  | |||||| || ||||||||||| ||||||||||| |   || | | ||  |  || |    | ||   ||| ||| |  |     || |   |||   | |        ||  | |   |     | ||| | 
GTATTAAGTATGTTCCAGTTCCCATGGTGCCTCAAAGTGAAAGGTTCCTTTTTCGGCGAGTTTGCCAGAGAAGCTATCATATATTTCGCTGTATTGCCAGgtaactagctaaatattttacattttgagatattgtgtattgtgtacctttgctagttcagttgaggt-atgagcttttgaaaaattgaatggattgtgaa-

upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G24530.1 (Glycine max), 5'ss of exon 9
GCATAAAGTATGTTCCAGTTCCTGTAGTGCCTCAGAGTGAAAGGTTCCTTTTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtctcattcttgcaagttgtcct-tgttacatat-gtggaattgcatgagattcattgtcatcaatcatgcctgctatagacaccaattgg---tggaa
| || |||||||||||||| ||| | |||||||| |||||||||||||||||  |  |||| ||||  | |||||| || ||||||||||| ||||||||||| ||  || | | ||  |  || |    | ||   ||| ||| |  |   | || |   |||     |    ||     |  | |  |  | |||   | |||
GTATTAAGTATGTTCCAGTCCCTATGGTGCCTCAAAGTGAAAGGTTCCTTTTTAGGCGAGTTTGCCAGAGAAGCTATCATATATTTCGCTGTATTGCCAGgtaacaagctaaatattttacattttgggatattgtgtattgtgtacctttgttagttctgttg-----aggtgtgaacttttgaaaagctgaatggattttgaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37187922|gb|CF607273.1|CF607273
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|32269031|gb|CD718190.1|CD718190
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|30324910|gb|CD008172.1|CD008172
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|37188453|gb|CF607802.1|CF607802
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|32270233|gb|CD719392.1|CD719392
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|30327536|gb|CD010798.1|CD010798
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|32248831|gb|CD714650.1|CD714650
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|30325279|gb|CD008541.1|CD008541
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|110700216|gb|EE078004.1|EE078004
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACNANGATGTTCGCAAAGAAGA-TCATCAGACATTTGAGCAGC
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGA-GAATCATCAGACATTTGAGCAGC
EST: gi|30327238|gb|CD010500.1|CD010500
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|110699249|gb|EE076080.1|EE076080
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|110388090|gb|EC952806.1|EC952806
EST:     CAAAAAGCTACCACATATTTCGCTGCATTGCCTG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: CAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
EST: gi|30132699|gb|CB918038.1|CB918038
EST:     TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAG                         GTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT
genomic: TTCCGCAGAGTCTGCCCAAAAAGCTACCACATATTTCGCTGCATTGCCAGgtagcagtct ... tggttgacagGTATGGCTACAAGGATGTTCGCAAAGAGAATCATCAGACATTTGAGCAGCT