Sequence
atgc intronic sequence ATGC exonic sequenceGGACATTAACCAAGGGACTCTTGTTGTGTTTAATTTGGATGCATCGGTATCAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAGgtgtaattctttttcccttttaatagctgttttatttatttattttttctagtcattcctctacttatcatccttttttctaacctgtttgacttgtgaattttcttgtatgcaaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G12730.1 (Glycine max), 5'ss of exon 5
GGACATTAACCAAGGGACTCTTGTTGTGTTTAATTTGGATGCATCGGTATCAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAGgtgtaattctttttcccttttaatagctgttttatttatttattttttctagtcattcctctacttatcatccttttttctaacctgtttgacttgtgaattttcttgtatgcaaaatgcag
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AGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGgtaaaatatatattaac-----atatctgtttattttaaatgtattttctt----tggcaccactta--atgtttatccagtgcttggagtatttgtaaattct---gtattaaaattgcag
upper sequence: Vv12s0142g00100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G42230.1 (Glycine max), 5'ss of exon 4
GGACATTAACCAAGGGACTCTTGTTGTGTTTAATTTGGATGCATCGGTATCAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAGgtgtaattctttttcccttttaatagctgttttatttatttattttttctagtcattcctctacttatcatccttttttctaacctgtttgacttgtgaattttcttgtatgcaaaatgcag
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AGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGgtaatatatgctaacatatctgatga---ttttaa--atgtattttctttgg-----cctccactcaaagt--ttatctagtgcttggagtagttgtaactttt---gtattaaaattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713064|gb|FC062145.1|FC062145EST: CAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAG ATCAGGGAAACACCACACAAGCGACACCATAAGTTCATTGAATTTTATGAT
genomic: CAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAGgtgtaattct ... caaaatgcagATCAGGGAAACACCACACAAGCGACACCATAAGTTCATTGAATTTTATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACATTAACCAAGGGACTCTTGTTGTGTTTAATTTGGATGCATCGGTATCAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAGgtgtaattctttttcccttttaatagctgttttatttatttattttttctagtcattcctctacttatcatccttttttctaacctgtttgacttgtgaattttcttgtatgcaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG