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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtacttcgaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtcttaaatttttctcatcttttttttttctttattag

Basic information

species Vitis vinifera
transcript Vv12s0121g00080.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtacttcgaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtcttaaatttttctcatcttttttttttctttattag
| | ||||| ||||| || || || ||||||||||||| |||  ||||| |  | || | |||| | |||||||| ||||||||||| ||||||||||||||||| | |     ||||    || |   ||||   | | | |  ||   ||  ||  |       |   |||  | |||||| ||  |||||  |  |    
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgtt-gcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttgcag---

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtacttcgaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtcttaaatttttctcatcttttttttttctttattag
|||| || |||| || || |||||||||||||| |  | ||    |||| |||  || |  |||    | ||||| |||||||||||||||||||| |||||| ||||    |||  |||  ||   |   ||  |   | | |     ||   ||  ||     |  |||| || || || | |||| | |||||       
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtac---aaacttatgcattcttgtccttc-taggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag-----