1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTCAAGGACCTCTGTATTCTGGAACGGGATGTTTTCATCGAAGAAAAGTTATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtcaacttttccacggtcattcttcactttatttatgtaccattttaattttcttagtgggatcttaaaatgtgctatgaaactaagcattacagttttctctactttttggtag
species | Vitis vinifera |
transcript | Vv12s0059g01000.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATG GAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAATEST: gi|349817993|gb|FQ407982.1|FQ407982
genomic: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtc ... tttttggtagGAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAAT
EST: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATG GAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAATEST: gi|349822374|gb|FQ412638.1|FQ412638
genomic: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtc ... tttttggtagGAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAAT
EST: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATG GAAAATTAATCGATGACAGATTAGAAAAAACATTCGGAAATTCAAAGGAATEST: gi|349807920|gb|FQ402311.1|FQ402311
genomic: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtc ... tttttggtagGAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAAT
EST: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATG GAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAATEST: gi|349817115|gb|FQ399862.1|FQ399862
genomic: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtc ... tttttggtagGAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAAT
EST: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATG GAAAATTAATCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAATEST: gi|349825728|gb|FQ421827.1|FQ421827
genomic: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtc ... tttttggtagGAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAAT
EST: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATG GAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAAT
genomic: TATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtc ... tttttggtagGAAAATTAACCGATGAGAGATTAGAAAAAACATTCGGAAATTCAAAGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAAGGACCTCTGTATTCTGGAACGGGATGTTTTCATCGAAGAAAAGTTATCTATGGGTCATGGCCGGATGGCAGGATGGAGATTAAAGGAAGAAATGgtatgcagtcaacttttccacggtcattcttcactttatttatgtaccattttaattttcttagtgggatcttaaaatgtgctatgaaactaagcattacagttttctctactttttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA