Sequence
atgc intronic sequence ATGC exonic sequenceTGCCACATCAGGGGGTATACTGGACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatggttttgtatcttcttctgtgacttgctttctgtattcttctgtatgcttgatgcctccaaggaacatcttcattacctataattataaagttaatttgccccacatgtctgtgttactgtgtgagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 6
TGCCACATCAGGGGGTATACTGGACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatggttttgtatcttcttctgtgacttgctttctgtattcttctgtatgcttgatgcctccaaggaacatcttcattacctataattataaagttaatttgccccacatgtctgtgttactgtgtgagcag
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TGCTATTTCAGGTGGAATTGTCGATAGAGCAATTCAGGCAGAGGATAAGAAACATGGAGACTTCATGAGGCTGgtaacgtttcacttggttcactaat--cttgctagccccattgccttctagatctgttg--------gaatgtgatc----cccctaaccctaacaggggtttgggtgatatat--------------------
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 6
TGCCACATCAGGGGGTATACTGGACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatg-gttttgtatcttcttctgtgacttgctttctgtattcttctgtatgcttgatgcctccaaggaacatcttcattacctataattataaagttaatttgccccacatgtctgtgttactgtgtgagcag
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TGCTACATCAGGTGGTATTCTAGACAGAGCTATTGAAGCAGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGgtaatgtgacatatatgatcccttttcacattttttcc-taccgtttc-tataatcgct-tcacagtgtcatagcttttgaagggaaagggaaaaatgtcacaggtttt-cacttctttatttgtttatatgcag
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 6
TGCCACATCAGGGGGTATACTGGACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatggttttgtatcttcttctgtgacttgctttctgtattcttctgtatgcttgatgcctccaaggaacatcttcattacctataattataaagttaatttgccccacatgt---ctgtgttactgtgtgagcag
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TGCTACATCAGGTGGTATTTTAGACAGAGCTATTGAAGCAGAGGACAGAAAGCATGGAGATTTCTTAAGGCTGgtaatgtttcc-------ctcccacatgtcccttttcacattttttttcaccctttctaaactc--gcttcagtgtcagcttttgaaggga-aagggaaaaatgtcacagattttcacttctttatactatgtgcag
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 6
TGCCACATCAGGGGGTATACTGGACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatggttttgtatcttcttctgtgacttgctttctgtattcttctgtatgcttgatgcctccaaggaacatcttcattacctataattataaagttaatttgccccacatgtctgtgttactgtgtgagcag----------------------------------
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TGCCACATCAGGGGGTATCTTAGACAGAGCTATTGAAGCAGAAGATAGGAAGCATGGAGATTTCCTGAGACTGgtaatgatcctctttgtcttattgctgttttccccgttgtctcttctatcatttgtctctacttgaataatcacttgataagatatcatggtcacatttatttgaaggaaaaattaaataaaaaaaaagaaatgcaacaagtttcaaacctctgttttgatttttcag
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 6
TGCCACATCAGGGGGTATACTGGACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatggt--tttgtatcttctt-ctgtgacttgctttctgtattcttctgtatgct-tgatgcctccaaggaacatct------------tcattacctataattata----------aagttaatttgccccacatgtctgtgttactgtgtgagcag
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TGCCACATCAGGGGGTATCCTAGACAGGGCTATTGAAGCAGAAGATAGAAAGCATGGAGATTTCCTAAGATTGgtaatgatcctctttgtcttattgccgtttctgcccctatgtcccttctctcatgttgtcactacttgaataatcacctgtcaagattggatgatcacatttatttatagtggaaaaaaaacgcaactggtttcaaatcttagtgct-ttgattctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30137885|gb|CB923223.1|CB923223EST: ACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTG GAACATGTTGAAGGTTACCTCGAACTGTCTGCCAAGACAAAGATATATTTT
genomic: ACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatggttt ... gtgtgagcagGAACATGTTGAAGGTTACCTCGAACTGTCTGCCAAGACAAAGATATATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCCACATCAGGGGGTATACTGGACAGAGCTATCGAAGCAGAGGACAAAAAACATGGAGACTTCTTGAGGCTGgtaatggttttgtatcttcttctgtgacttgctttctgtattcttctgtatgcttgatgcctccaaggaacatcttcattacctataattataaagttaatttgccccacatgtctgtgttactgtgtgagcag
- - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA