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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCATACAATGAGGACAATTTTAAGAGACGCAGGCACTCATGAGTGACCTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcattatattattagtttgattatggtccagatccacaaaaacctctctctgctgcctcaggttattgtgtcttcaagatatgacttgagtgcaagagtagggttttagaatcattattaccatgaaacacattctctttctataaagcagcataaatgtatacatccattaaaaccctccttctgtttcag

Basic information

species Vitis vinifera
transcript Vv12s0035g00640.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110420292|gb|EC986560.1|EC986560
EST:     CTTGGCTGCTGCTGTGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
EST: gi|27582732|gb|CB005427.1|CB005427
EST:     CTTGGCTGCTGCTGTGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
EST: gi|30129062|gb|CB914401.1|CB914401
EST:     CTTGGCTGCTGCTGTGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
EST: gi|110362932|gb|EC926494.1|EC926494
EST:     CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTTCTTTCGTCTACCATAGGTGGCTGCGAGTTCAGAGACTTCAAT
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAG---AGA--CTTCAAT
EST: gi|110398569|gb|EC965022.1|EC965022
EST:     CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTTCTTTCGTCTACCATAGGTGGCTGCGAGTTCAGAGACTTCAAT
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAG---AGA--CTTCAAT
EST: gi|110380341|gb|EC945597.1|EC945597
EST:     CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTTCTTTCGTCTACCATAGGTGGCTGCGAGTTCAGAGACTTCAAT
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAG---AGA--CTTCAAT
EST: gi|32246020|gb|CD711839.1|CD711839
EST:     CTTGGCTGCTGCTGTGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAGAGACTTCAATCCACA
EST: gi|110393671|gb|EC959079.1|EC959079
EST:     CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAG                         GACAGAGTTCTTTCGTCTACCATAGGTGGCTGCGAGTTCAGAGACTTCAAT
genomic: CTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcat ... tctgtttcagGACAGAGTACTTTCGTCTTCCATGGGTGGCTGCGAG---AGA--CTTCAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTCATACAATGAGGACAATTTTAAGAGACGCAGGCACTCATGAGTGACCTTGGCTGCTGCTGAGATTTCAACATTTGTTGCTTATATCCACTTTTAAGgtatgtgcattatattattagtttgattatggtccagatccacaaaaacctctctctgctgcctcaggttattgtgtcttcaagatatgacttgagtgcaagagtagggttttagaatcattattaccatgaaacacattctctttctataaagcagcataaatgtatacatccattaaaaccctccttctgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT