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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAGGGAGCTTCCTTCTCCAGGGAAAAGTGGCAGTCTCTTCTATCTTTCTCATGATGACAGATTTTTGATTAAGACTTTAAAAAAATCTGAACTAAAGgtatgtgcgtattgcaactatcattatttttagttgaagttcctggcatgttaactaacttgtctatttgcatgaatgtagctctcagctaatttcatac...

Basic information

species Vitis vinifera
transcript Vv12s0034g01790.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g49510.1 (Oryza sativa), 5'ss of exon 5
TCTCAGGGAGCTTCCTTCTCCAGGGAAAAGTGGCAGTCTCTTCTATCTTTCTCATGATGACAGATTTTTGATTAAGACTTTAAAAAAATCTGAACTAAAGgtatgtgcgtattgcaactat-------cattatttttagttgaagttcctggc--atgttaactaacttgtctatttgcatgaat---gtagctctcagctaatt-tcatac---------------------------------------------------------------
||| | ||||||| |||| || ||||||||||||||  | |||||||||||||| |||||  | ||| | || || || || |  ||| |||| || ||||||||  |      ||| | |       || ||    ||||   | ||  |     |   | |||||        ||| || |||      || | |  |||||    | |                                                                 
TCTAAAGGAGCTTTCTTCACCTGGGAAAAGTGGCAGCATTTTCTATCTTTCTCAAGATGAACGTTTTGTTATAAAAACATTGAGGAAAACTGAGCTGAAGgtatgacccaccctcaatttttttcttgcaataacaatagtgttatttgttaattaaaaatgactaaaactgagctttacaagaacaacaaagatttgtgctaaaaaccgtgtatatccttgttaagtgataagatatgcctactgcagattggtttgatgtaatacgtgctgcag

upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G19860.1 (Glycine max), 5'ss of exon 3
TCTCAGGGAGCTTCCTTCTCCAGGGAAAAGTGGCAGTCTCTTCTATCTTTCTCATGATGACAGATTTTTGATTAAGACTTTAAAAAAATCTGAACTAAAGgtatgtgcgtattgcaactatcattatttttagttga--agttcctggcatgttaactaacttgtctatttgcatgaatgtagctctcagctaatttcatac
 || |||||  |  ||||||| || |||||||| ||  |||||||||||||| | ||||| |||||| |||| |||||| | || ||||||||||||||||| |||  ||      | |||  ||  |     | ||  |||| ||   |        || || ||  | |     | |  |  | |  |     |    | 
ACTAAGGGACTTGTCTTCTCCTGGAAAAAGTGGTAGCATCTTCTATCTTTCTAAAGATGATAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgta-gtcccttcattatagtttatgaacatggattagtttctaaaacacatttaaagttttccctctttcctattacatgtattggtcttgtgagaa-

upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G05150.1 (Glycine max), 5'ss of exon 3
TCTCAGGGAGCTTCCTTCTCCAGGGAAAAGTGGCAGTCTCTTCTATCTTTCTCATGATGACAGATTTTTGATTAAGACTTTAAAAAAATCTGAACTAAAGgtatgtgcgtattgcaactatcattatttttagt-tga---agttcctg--gcatgttaactaacttgtctatttgcatgaatgtagctctcagctaatttcatac
||| |||||  |  ||||||| || |||||||||||  | |||||||||||| | ||||| |||||| |||| |||||| | || ||||||||||||||||| |||  ||      | ||| ||  || | |   ||    |||| ||    ||  ||||  | |||  |   |||| |   |  |  | |  |     ||     
TCTAAGGGACTTGTCTTCTCCCGGAAAAAGTGGCAGCATTTTCTATCTTTCTAAAGATGATAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgta-gtcccttcattattatacttatgaacatggattagtttctaaaacacattaaa-agctttccctcttgccttt-tacatgtattggtcttgttag---

upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S31_309V6.1 (Physcomitrella patens), 5'ss of exon 4
TCTCAGGGAGCTTCCTTCTCCAGGGAAAAGTGGCAGTCTCTTCTATCTTTCTCATGATGACAGATTTTTGATTAAGACTTTAAAAAAATCTGAACTAAAGgta--------tgtgcgtattgcaactatcattatttttagttgaagttcctggcatgttaactaacttgtctatttgcatgaatgtagctctcagctaatttcatac
  | |||||||||  ||| || ||||||||||||||| | || |||||||| ||||||||| ||||  | || || ||  | || ||  | ||| | |||||          |||  | | | ||  || | |||| || |  | |  | | | ||| |     ||  | | | |||| ||  | ||   |  | || |||       
ATTGAGGGAGCTTGTTTCGCCTGGGAAAAGTGGCAGTGTATTTTATCTTTCGCATGATGACCGATTCATCATCAAAACGATGAAGAAGGCAGAAGTGAAGgtgatctacctcgtgtttttgggaaagattaatattattggcggga--ttcggtcat-taggtgaaagtatttttttg-atatacgtttgttactgc-aatgagg---