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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTATTTGGGATACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattccccaattcagtaaatgatactgtattttattttattctccttttctatgtctttgtggttaagtaatcatttccaaaattgaaatccttgggaaaataaagcatgctgaacatgaaccttgttgacattctcgacatctgatttagttcccctgaatgtttaatataaatgctttgtatgcag

Basic information

species Vitis vinifera
transcript Vv11s0103g00120.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 6
TTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTATTTGGGATACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattccccaattcagtaaatga-tactgtattttattttattctccttttctatgtctttgtg-gttaagtaatcatttccaaaattgaaatccttgggaaaataaagcatgctgaacatgaaccttgttgacattctcgacatctgatttagttcccctgaatgtttaatataaatgctttgtatgcag
|||||||||||| || || |||||  || |||| |||||||||||||  ||||| |||||||| || || ||||||| ||||||||| || || ||||| ||| |||    || || | ||  |  |   |    | || | |  || |||||   ||        || | ||||  |     |     | | || |   |||| | ||  ||  |     |  |  |  ||     ||||  | ||| || || | |   ||  || ||  |        ||| ||| |||
TTGGGCTTTTGGCCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGgtatttcatggatacattcaacaagcatccttcaatgttgtctcttctttttcctggttaccacatgtgatgtaactacaagaatttacgtagtcatcttgaaagtcaaa-atattatttgtttagttcttttgtgatctcttc-tctaatgtattgcatgtgcttgctttttg-----attttatatacag

upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 8
TTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTATTTGGGATACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattccccaattcagt-aaatgatactgtattttattttattctccttttctatgtctttgtggttaagtaatcatttccaaaattgaaatccttgggaaaataaagcatgctgaacatgaaccttgttgacattct-cgacatctgatttagttcccctgaatgtttaatataaatgctttgtatgcag
|||||||||||| || || |||||  || |||| |||||||||||||  ||||| |||||||| || || ||||||| ||||||||| || || ||||| ||| |||    ||    | || |   |   |    |  | | |  || |||||   ||     |   | |    | | | | | |||| |     |  |  |  |  || || |  || || | |  | | |   || |  ||  |||  | || |     ||  |||||    |      ||| ||| |||
TTGGGCTTTTGGTCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGgtatttcatggatatgttcaactagcatccttcaatgctgtctcttctttttcccggttgccatatgtgat--gtgactacaagaatttatgatgt-agtcatcttgagaat-caaaatattatctgtttagttcttttgtgatctcttctctaatgtat-tgcttgtttgccttttg-attttatatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352798745|gb|FQ478380.1|FQ478380
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCAATTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCAAGTTC
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTC
EST: gi|349825743|gb|FQ421842.1|FQ421842
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         A
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcag-
EST: gi|349825743|gb|FQ421842.1|FQ421842
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         A
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcag-
EST: gi|352790299|gb|FQ481498.1|FQ481498
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTTCAA-GGGCCAGCTAGGGGTCAAGTTCAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCT-CAAAGGGCCAGCTAGGGGTCAAGTTCAAG
EST: gi|351045887|gb|FQ441270.1|FQ441270
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG
EST: gi|351027076|gb|FQ439937.1|FQ439937
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAG
EST: gi|351045846|gb|FQ441031.1|FQ441031
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCAAGTTTCA-GCCATTTTCAAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTT-CAAGCCATTTTCAAAG
EST: gi|351053292|gb|FQ459160.1|FQ459160
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCGAGCC
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCC
EST: gi|351049456|gb|FQ450057.1|FQ450057
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGT
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGT
EST: gi|351052538|gb|FQ456386.1|FQ456386
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAAGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG
EST: gi|349807616|gb|FQ402007.1|FQ402007
EST:     TACCAGATATTCGGCTTTTCTGGTCAACAGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGGTCAAGTTCAAGCAATTTTCAAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGG-TCAAGTTCAAGCCATTTTCAAAG
EST: gi|351052564|gb|FQ456412.1|FQ456412
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAT                         TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAA
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAA
EST: gi|351043334|gb|FQ451386.1|FQ451386
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAAGGGTCAAGTTC
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTC
EST: gi|352764071|gb|FQ467641.1|FQ467641
EST:     TACCAGATATTC-GCTTTTTTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTGGGGGTCAAGTTCAAGCCATTTTCAAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG
EST: gi|351019220|gb|FQ429380.1|FQ429380
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGG
EST: gi|349808786|gb|FQ406636.1|FQ406636
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCA
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCA
EST: gi|33406146|gb|CF211773.1|CF211773
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG
EST: gi|349830653|gb|FQ416951.1|FQ416951
EST:     TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA                         TTCTCAAAGGGCCAGCTAAGGGTCAAGTTCAAGCCATTTTCAAAGTATCCT
genomic: TACCAGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAgtaattcccc ... ttgtatgcagTTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGTATCCT