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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCTTTGCGTTCTTTCAAGCGCCGTGTTGCGTATGCAAATGCAAACTATGATCgtatccttttctggttaaaaataagttttaaactctcaatttcttaagtattgaactgtattacccttctatataatttattgtttatcttcactgatattaag

Basic information

species Vitis vinifera
transcript Vv11s0052g01660.t01
intron # 6
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g54580.1 (Oryza sativa), 5'ss of exon 6
ATCAGCTTTGCGTTCTTTCAAGCGCCGTGTTGCGTATGCAAATGCAAACTATGATCgtatccttttctggttaaaaataagttttaaactctcaatttcttaagtattgaactgtattacccttctatataatttattgtttatcttcactgatattaag-
 || || ||||| ||||| |||||||||||||| ||||| |||| ||  ||||||||||||||      ||   |  | | ||      | |    || ||  |||||    || | |         | |  ||  |||| |   |    || |  |||  
GTCTGCGTTGCGCTCTTTTAAGCGCCGTGTTGCCTATGCGAATGTAACATATGATCgtatcctaccaatgtcccactttacttactttttttttccttttttggtattctcttgaactcaaggcaactttggttgcttgtgtccttaacatgttggtaaag

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G008242_T01 (Zea mays), 5'ss of exon 6
ATCAGCTTTGCGTTCTTTCAAGCGCCGTGTTGCGTATGCAAATGCAAACTATGATCgtatccttttctggttaaaaataagttttaaactctcaatttcttaagtattgaactgtattacccttctatataatttattgtttatcttcactgatattaag
 || |||||||| | ||||||||| |||||||| ||||| |||| ||  |||||||||||||   |   | || | ||   || ||   |||  ||   || |  | |  | | |        ||  | ||  |      ||| ||| |  || ||    
GTCTGCTTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaactgatgctacacatt--ttctattttctgcatcattttatgaattgattatcaagggtatccgtttacatgtgcccttaactt-atcgaaatag--

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G25620.1 (Glycine max), 5'ss of exon 7
ATCAGCTTTGCGTTCTTTCAAGCGCCGTGTTGCGTATGCAAATGCAAACTATGATCgtatccttttctggttaaaaataagttttaaactctcaatttcttaagtattgaactgtattacccttctatataa--tttattgtttatcttcactgatattaag
 |||||||| ||| | || ||||| || || || |||||||||||||| |||||||||||||| ||    ||| |  || ||||||||   | | |    | |  ||  ||   ||   ||  |  || |||  |  |     ||| | ||  | ||  |  
GTCAGCTTTACGTGCATTTAAGCGTCGAGTGGCATATGCAAATGCAAATTATGATCgtatcctctt----ttacatttaggttttaaaaaataattcatctgaccatataagcttaagcccaatgaatctaaagtcaaccacgtatgt-caaagttagcag-

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 6
ATCAGCTTTGCGTTCTTTCAAGCGCCGTGTTGCGTATGCAAATGCAAACTATGATCgtatccttttctggttaaaaataagttttaaactctcaat--ttcttaagtattgaactgtattacccttctatataatttattgtttatcttcactgatattaag
 |||||||| ||| | || ||||| || || || |||||||||||||| |||||||||||||| ||    ||| |  || ||||||||   | | |  |  || |  ||  ||   ||   |   |  || || |  |          |||  | ||  |  
GTCAGCTTTACGTGCATTTAAGCGTCGAGTGGCATATGCAAATGCAAATTATGATCgtatcctctt----ttatatttaggttttaaataataattcatctttgaccatataagcttaagcctaatgaatctagtcaaaccacatatgtcaaagttagca--