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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCAAAAAATTGGGGCTTTGGTTAACCTAGGAGCTTATTATCTAGCTGGAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactcttactctatttttaatctttctccccacttctcatatttcgttctagtttatatgctccaagaaaaagaaaaattaacccatttgtatatctacttggttcacag

Basic information

species Vitis vinifera
transcript Vv11s0052g01560.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110717970|gb|EE094290.1|EE094290
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTTTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|34546960|gb|CF515192.1|CF515192
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTTTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|110708165|gb|EE085398.1|EE085398
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTTTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|45770823|gb|CN006675.1|CN006675
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|352777774|gb|FQ466827.1|FQ466827
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|110413757|gb|EC979564.1|EC979564
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTTTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|34547049|gb|CF515281.1|CF515281
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGCCATTATTTTTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|34542705|gb|CF510937.1|CF510937
EST:     GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
EST: gi|352773655|gb|FQ472437.1|FQ472437
EST:     GAATTCCATTTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAG                         GGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT
genomic: GAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactctta ... tggttcacagGGATTCTGGACAGGAATTATAGTTTCACTCTTCCTGCAGGCATTATTTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGCAAAAAATTGGGGCTTTGGTTAACCTAGGAGCTTATTATCTAGCTGGAATTCCATCTGGTGCATTATTAGCTTTCGTCTATCATATTGGAGGAAAGgtaactcttactctatttttaatctttctccccacttctcatatttcgttctagtttatatgctccaagaaaaagaaaaattaacccatttgtatatctacttggttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA