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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca...

Basic information

species Vitis vinifera
transcript Vv11s0037g00180.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaac--ttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca-
|| ||||| |||  ||| || || || |||||||||||||| ||||||||||||||||| ||| |||| || ||||| |||||||| || ||||||||  | |  || |  | |    | |  |||||  | |||| | ||   ||||  | |||     |   | |  || |||||  | |         |       
GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacgaggcatagttatttag---taacgacgtgataccttttcttgtaatacttttga

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g55140.1 (Oryza sativa), 5'ss of exon 5
----GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca-------------------------------
    || ||||| |||||||| |||||||| || ||||| ||||| ||||||||||| ||||| ||| |||| || ||||| || || ||||| ||||||||   ||  ||||  | ||       ||  | | |  ||   |  ||   |  || |  |      | | |   ||||||     || ||||  |   |                                
AGAGGTTCATTTTATTGTTGCTGCTTGTGAAAACATGATTAGTGGCACAGGCATGAGACCTGGTGACATTGTGACTGCTTCTAACGGGAAGACTATTGAGgtatgtttgttgtgatacaatgcg--tatgattgtagaag--actaggaatcatgattcattaacataaatcagtgatagtgtgaaaaaatgcgtttgcttatgtattcatctgtatttatttttcttcag

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G178958_T01 (Zea mays), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcag-----gaaaattac--aacttttcaacttaggagaggttttgttggaaggctttta-ttacttgataggtgtcaagaatggatgcaca-------------------------------------------------------------------
|| || || || || || || ||||| |||||||| ||||| ||||||||||| ||||| ||| |||| || ||||| ||||| ||||||||||||||   || ||| |||   |        |||| ||   |   | ||   |    || | ||||||  ||||  | |  |   | |  | ||         | |  || |                                                                   
GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGACCTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAGgtatgttttttttttccaacttgttataaatgaccagaacgtgcatgattcatgaagctttgttataagggatctgctcgttcggaatgtagtcttttagcagtcatagatcatagtccttctgctccatgtctgctagttttcactaaacttttgctttttgaacgtatttcag

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G028114_T01 (Zea mays), 5'ss of exon 10
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgc---tttctttgttttgcaggaaa--attacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
|| || || || || || || ||||| |||||||| ||||| ||||||||||| ||||| ||| |||| || ||||| ||||| ||||||||||||||     ||| |     |||    |||  |  | ||| |      ||    ||   ||||||  ||||  | |  |  || |                       
GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGACCTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAGgtatgtttttttccaacttgttataaatgaccagaacgtgcatgattcat-gaatctttgttataagggatctgctcgttcag----------------------

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G018558_T02 (Zea mays), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgtt---ttgcaggaaa--attacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
|| || || ||  | || || ||||| |||||||| ||||| |||||||||||  |||| ||| |||| || ||||| ||||| ||||||||||||||   || ||| |    |||    |||  |  | ||| |      ||    ||   ||||||  ||||  | |  |  || | |  |||         | |    
GTTCACTTTATAATCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGAACTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAGgtatgttttttttcaacttgttataaatgaccagaacgtgcatgattcat-gaatctttgttataagggatctgctcgttcagaa-tgtagtcttcaaaggt---

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G468367_T01 (Zea mays), 5'ss of exon 5
----GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcagg--aaaattac--aacttttcaacttaggagaggttttgttggaaggcttttattacttga-----taggtgtcaagaatggatgcaca
    || || || || || || || ||||| |||||||| ||||| |||||||||||  |||| ||| |||| || ||||| ||||| ||||||||||||||   || ||| ||   |  |  | ||| ||   |   | ||   |    ||   ||||||  ||||  | |  |  || |     ||||  ||||   |         
ACAGGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGAACTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAGgtatgtttttttttcaacttgttataatgaccagaacgtgcatgattcatgaatctttgttataagggatctgctcgttcagaatgtaggcttcaaaggt---------

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G388453_T01 (Zea mays), 5'ss of exon 9
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgtt---ttgcaggaaa--attacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
|| || || || || || || ||||| |||||||| ||||| |||||||||||  |||| ||| |||| || ||||| ||||| ||||||||||||||   || ||| |    |||    |||  |  | ||| |      ||    ||   ||||||  ||||  | |  |  || | |  |||         | |    
GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGAACTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAGgtatgttttttttcaacttgttataaatgaccagaacgtgcatgattcat-gaatctttgttataagggatctgctcgttcagaa-tgtagtcttcaaaggt---

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G126913_T01 (Zea mays), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgt--gctttctttgttttgcaggaaa--attacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
|| || || || || || || ||||| |||||||| ||||| |||| ||||||  |||| ||| |||| || ||||| ||||| ||||||||||||||  | ||| ||    |||    |||  |  | ||| |      ||    ||   ||||||  ||||  | |  |  || | |  |||         | | |  
GTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGACATGAGAACTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAGgtatgtttttttcaacttgttataaatgaccagaacgtgcatgattcat-gaatctttgttctaagggatctgctcgttcagaa-tgtagtcttcaaaggta--

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G08150.1 (Glycine max), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaac-ttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| || |||||| |   |||  | |       | ||  |  ||||  || |||        ||| ||     | |  |    | |  ||  ||       | | | ||  
GTTCATTTTATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtg-tggatttactatattttttatttgtagattttgtacattaaatttatgttttttaatgtgatactgactcgtagtatctggtggattttgtttcagt

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G22730.1 (Glycine max), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaacttaggagaggttttgttggaaggc-ttttatt-acttgataggtgtcaagaatggatgcaca
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| || ||||||     ||  |        |   ||   | || |  ||  | |  |  ||  |||   | |  |  |||| |    || ||  |   |  |||||    |
GTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaatttattaggttcatattgttttgatttgt--acgcatgtaaatttaagttactatgtatggtattgagacaattggcctattgggtggattttta

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G36530.1 (Glycine max), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtg----ctt--tctttgttttgcaggaaaattacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| || ||||||     ||  | | | ||||    | |||||       || || |||  ||   ||||||   | | ||  || || ||| | | | |      ||  |     
GTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgaggatttaatatattttttatttgtaaattttgcacgttaaaatta--agtttttttgtgatatgactcatagtatttggtggattttgtttctgtttc----

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G19350.1 (Glycine max), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaac-ttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
|| ||||| ||||||||| | |||||||||||||||||||||||| | ||||||||||||||  |||||||| |||||||||||||||| || |||||| |   |||  | |       | ||  |  ||||  || |||         || ||     | |  |    | |  ||  ||       | | | ||  
GTTCATTTTATTGTTGCAACCTGTGAGAATATGATAAGTGGAACAAGTATGAGGCCTGGAGATATTGTCACAACTTCAAATGGAAAGACTATAGAGgtg-tggatttactatattttttatttgtagattttgtacattaaatttatgctttttaatgtgatactgactcgtagtatctggtggattttgtttcagt

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G30910.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
||||| || ||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||  ||||||| ||||| || ||||||||||||||    |       || |   |  | | || |||   ||  |   ||   ||   |||  ||  ||  |                               
GTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACCGGAATGAGACCTGGAGATGTCATCACAGCCTCAAACGGGAAGACAATTGAGgtatcattacaccgtttccatatgaattcagcttcgaaaggttcaagct-ttccattgttagtgttgcag------------------------------

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G30920.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca
||||| || ||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||  ||||||| ||||| |||||||| ||||||||    |       || |   |  | | || |||   ||  |  |||   ||   |||  ||  |||||   |    ||  |||      |   ||||  
GTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACTGGAATGAGACCTGGAGATGTCCTCACAGCCTCAAACGGAAAGACGATTGAGgtatcataacaccgtttccatatgaattcagcttcaaaaggttcgagct-ttccattgttag--ttttacgccaaactaattgtgggtggtat-tgcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110395105|gb|EC960661.1|EC960661
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110387421|gb|EC952084.1|EC952084
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110703717|gb|EE080805.1|EE080805
EST:     CATGANGCCTGNAGACGTTGTCACAGCTTNCAA-TGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGA
genomic: CATGAGGCCTGGAGACGTTGTCACAGCTT-CAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGA
EST: gi|351027495|gb|FQ444744.1|FQ444744
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|26266040|gb|CA817103.1|CA817103
EST:     GCTTCAAATGGAAAGACAATTGAG                         GTCAATTAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGT
genomic: GCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAA-TAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGT
EST: gi|110391662|gb|EC956652.1|EC956652
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110407927|gb|EC973545.1|EC973545
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|30253256|gb|CB970807.1|CB970807
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110719313|gb|EE097146.1|EE097146
EST:     GCATGAGGCCTGGAGACGTTGTCACTGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTTG-A
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|34414873|gb|CF413627.1|CF413627
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110423246|gb|EC989587.1|EC989587
EST:     TCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: TCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|71885860|gb|DT034915.1|DT034915
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110378787|gb|EC943935.1|EC943935
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|352782298|gb|FQ470200.1|FQ470200
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|349826195|gb|FQ416000.1|FQ416000
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|351024424|gb|FQ426233.1|FQ426233
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|71884348|gb|DT033403.1|DT033403
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|352782236|gb|FQ470138.1|FQ470138
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|352781590|gb|FQ468888.1|FQ468888
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110359619|gb|EC921397.1|EC921397
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110719195|gb|EE096892.1|EE096892
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110368156|gb|EC932124.1|EC932124
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110700000|gb|EE077540.1|EE077540
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110373451|gb|EC937689.1|EC937689
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|352773813|gb|FQ472595.1|FQ472595
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA
EST: gi|110356896|gb|EC920053.1|EC920053
EST:     GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG                         GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGATGCTTTGGTA
genomic: GCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctt ... tctactgcagGTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaacttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggagagg