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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATCTCAATACCGAAAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtaccatgtttgtttttactaattatctgtacttctggtcattgaaagctctgacaaacagtttttatttttttctctttgaag

Basic information

species Vitis vinifera
transcript Vv11s0037g00110.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G439457_T01 (Zea mays), 5'ss of exon 6
---------------------------------ATTTATCTCAATACCGAAAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtaccatgtttgtttttactaattatctgtacttctggtcattgaaagctctgacaaacagtttttatttttttctctttgaag
                                  || || ||  | || |||||||||||| ||||||||||||| || |||||||| |||||||||| ||||   |      |  |  | ||  || | ||   | | | ||    | ||  | | |  |  | ||| ||  ||||| |        
AGTCTAAATTTGATATTCTTTCTATTTGGACAGTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAGgtagaaattccagtactagtgacagatgaccttatcattttgttgaagcaatatgtcaacattactttgtaactttttgtag------

upper sequence: Vv11s0037g00110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 7
ATTTATCTCAATACCGAAAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtaccatgtttgtttttactaattatctgtacttctggtcattgaaagctctgacaaacagtttttatttttttctctttgaag
 || || ||  | || |||||||||||| ||||||||||||| || |||||||| |||||||||| ||||   |      |  |  | ||  || | ||   | | | ||    | ||  | | |  |  | ||| ||  ||||| |        
TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAGgtagaaattccagtactagtgacagatgaccttatcattttgttgaagcaatatgtcaacattactttgtaactttttgtag------

upper sequence: Vv11s0037g00110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G03480.1 (Glycine max), 5'ss of exon 7
ATTTATCTCAATACCGAAAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtaccatgtttgtttttactaattatctg-tact--tctggtcatt---gaaagctctgacaaacagtttttatttttttc--tctttgaag----
 || || || || || || ||||||||||| || |||||||| |||||||||||||| || ||| |||||  | |  || || | || | ||| | ||   || |  |||| |  ||   ||||| ||| |  |   |||||  ||| ||||  || |  | |    
-TTCATTTCTATCCCAAAGGACATGGGAACGTTTAACTGTGGAGCATTTGTTGCTGGAATAGTACGGGtaattgctttgctt-tgttcagtaactgtcaactagtaatctgattcttagagaaaggtctaaagagtggttttattttgtttcattcatcaatgaagg

upper sequence: Vv11s0037g00110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G34840.1 (Glycine max), 5'ss of exon 7
ATTTATCTCAATACCGAAAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtaccatgttt------gtttttactaattatctgtacttctggtcattgaaagctctgacaaacagtttttatttttttc--tctttgaag---
||| || || || || || ||||||||||| || |||||||| |||||||||||||| || ||| ||||| || |  || ||      | |  |   || ||  | | ||| |  | |  ||||| ||| |  |  ||||||  ||| ||||  || |  | |   
ATTCATTTCTATCCCAAAGGACATGGGAACGTTTAACTGTGGAGCATTTGTTGCTGGAATAGTACGGgtaagtgctttgctttgttcagctactgtcaaatagttat-cttattcttagagaaagttctaaatagtagttttgttttgtttcattcatcaatgaag

upper sequence: Vv11s0037g00110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G58030.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTTATCTCAATACCGAAAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtaccatgtt--tgtttttactaattatctgtacttctggtcatt-gaaagctctgacaaacagtttt-tatttttttctctttgaag
 || || || || || ||||||||||||||||||||||| || || |||||||||||||| || | |||  || |    ||    | || || |||    |  |  | |  |   | ||       || ||  ||  |   |   ||| |||| || ||
GTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGTTGCTGGCATAGTGAAGgtgagtgctcccttgacatattcacgaatagggttcaaatttaattggtagaggaagaagataatgagcctgacacggtttcctctatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415074|gb|EC980946.1|EC980946
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|34543363|gb|CF511595.1|CF511595
EST:     AAGACATGGGACCATTCAACTGTGGTGCATTTGTTGCTGCCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|34543277|gb|CF511509.1|CF511509
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|349827547|gb|FQ422415.1|FQ422415
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|351018852|gb|FQ425754.1|FQ425754
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|33408903|gb|CF214530.1|CF214530
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|110406906|gb|EC972493.1|EC972493
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|351041121|gb|FQ444098.1|FQ444098
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|33408990|gb|CF214617.1|CF214617
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|349827476|gb|FQ422344.1|FQ422344
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
EST: gi|110362846|gb|EC926403.1|EC926403
EST:     AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGG                         GGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA
genomic: AAGACATGGGAACATTCAACTGTGGTGCATTTGTTGCTGGCATTGTAAGGgtatgtacca ... ctctttgaagGGCGTTTTGGATAGTGCAGGTTTTCCAGCTGTGGTAACAGCTCACTTTGTA