Sequence
atgc intronic sequence ATGC exonic sequenceGTACTCAGCATGAGCAGGTTGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGgttcgtttttttatttatttatttaaatgaagagcacaaatctgaaacaggatgcaatttggcttgtagtagtccagtcactctcagttaaacgacgtcg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G33020.1 (Glycine max), 5'ss of exon 6
GTACTCAGCATGAGCAGGTTGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGgttcgtttttttatttatttatttaaatgaagagcacaaatctgaaacaggatgcaatttggcttgtagt-agtccagtcactctcagttaaacgacgtcg-
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GTTCTGAGCATGAGCAGATTGGGCGGTGCTGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGgtt-attactatacaagtgctcttccattttcattccctattt-aatcagaaaaatgtgtggtaaacattcaatatcgtatttaatatctagagaaagtgaa
upper sequence: Vv11s0037g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G14380.1 (Glycine max), 5'ss of exon 6
GTACTCAGCATGAGCAGGTTGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGgttcgtttttttatttatttatttaaatgaagagcacaaatctgaaacaggatgcaatttggcttgtagtagtccagtcactc--tcagttaaacgacgtcg-----
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GTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTACTCTGAGgtta------ttacttattactatacaaatgctcttccattttcatttactatctaataacaaaaatgttagatcaa-cattcaatatgttattcaaggtatagaaa
upper sequence: Vv11s0037g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G08300.1 (Glycine max), 5'ss of exon 6
GTACTCAGCATGAGCAGGTTGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGgttcgtttttttatttatttatttaaatgaagagcacaa-atctgaaacaggatgcaatttggcttgtagtagtccagtcactctcagttaaacgacgtcg
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GTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTTGCTGAGgtatattacactatatttttcaacttcaataccatgatatgatagtttcaacaactttagcaaaagaaaaac--gataaaaatgctaaaatggcgagggttt-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964363|gb|GW838166.1|GW838166EST: TGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAG GGGGGTGGTGACTGTATACAGGCTAGTGGGACAAGCGGCCCTACAGGAGGA
genomic: TGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGgttcgttttt ... tgtgtggtagGGAGGTGGTGACTGTATACAGGCTAGTGGGACAAGCGGCCCTACAGGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTACTCAGCATGAGCAGGTTGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGgttcgtttttttatttatttatttaaatgaagagcacaaatctgaaacaggatgcaatttggcttgtagtagtccagtcactctcagttaaacgacgtcg
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactctc