Sequence
atgc intronic sequence ATGC exonic sequenceAAGCCCTGAGGAAGGAGATGCTAAACCTCAACGAACAGGCCATCTTCCTGCATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAAgttagtttgattcttatttgcacaaatttacattcattttgtgtttcagcttcacttgatcaaattcagggattttatttttttatttcttttttgattgggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g05460.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G056166_T04 (Zea mays), 5'ss of exon 6
--AAGCCCTGAGGAAGGAGATGCTAAACCTCAACGAACAGGCCATCTTCCTGCATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAAgttagtttgattcttatttgcacaaatttacattcattttgtgtttcagcttcacttgatcaaattcagggattttatttttttatttcttttttgattgggcag
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AGAAGAATCAA--ATGAAAGTGTGAAACCTCAAAGGGTTGGCAGCACTCCTTCATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAACGAAGAGAGgt------aactcat-tatagataacttagcactggtttagtttaagaacttatgggcatca--ttc-----ctttgcttacactatcctgcaatgatatag---
upper sequence: Vv11s0016g05460.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G137479_T02 (Zea mays), 5'ss of exon 6
--AAGCCCTGAGGAAGGAGATGCTAAACCTCAACGAACAGGCCATCTTCCTGCATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAAgttagtttgattcttatttgcacaaatttacattcattttgtgtttcagcttcacttgatcaaattcagggattttatttttttatttcttttt-tgattgggcag
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CGAAGAATCAA--ATGAAAGTGTGAAACCTCAAAGGGTGGGCAGCACTCCTTCATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAGgt------aactcattgttagataactttgcactggtttta-gtttaagaa-catttgggca---cca-----ttcctttccttacaccgttctgcaatgatatag
upper sequence: Vv11s0016g05460.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G07100.1 (Glycine max), 5'ss of exon 6
AAGCCCTGAGGAAGGAGATGCTAAACCTCAACGAACAGGCCATCTTCCTGCATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAAgttagtttgattcttatttgcacaaatttacattcattttgtgtttcagcttcacttgatcaaattcagggattttatttttttatttcttttttgattgggcag
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---TCCTACCGCAGAAGATGCCAAACCTCGCAGGGTGGGAGCACTTCCAAAATATGGATTCAGTTTCAAGTGTGATGAGCGAGCTGAGAGAAGAAAAGAGgtaaat--aattattacttgcttctgcct---tttgtgttacatgagggtttcttttggataaactcag---ttttaaaaaaatgttattttggtggccag----
upper sequence: Vv11s0016g05460.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G07190.1 (Glycine max), 5'ss of exon 6
AAGCCCTGAGGAAGGAGATGCTAAACCTCAACGAACAGGCCATCTTCCTGCATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAAgttagtttgattcttatttgcacaaatttacattcattttgtgtttcagcttcacttgatcaaattcagggattttatttttttatttcttttttgattgggcag
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---TCCTACTGCAGAAGATGCCAAACCTCGCAGGGTGGGGGCGCTCCCAAAATATGGATTCAGTTTCAAGTGTGATGAGCGAGCTGAGAGAAGAAAAGAGgtaaat--aattattatttgcttctgcct---tttatgttgcacgagggtttcattttgatcaactcatagtttaaaaaaagttattt---tggtggccag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110371086|gb|EC934835.1|EC934835EST: CATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAA TTCTATTTGAAGCTTGAGGAAAAGACTCATGCGAAGGAAGTGGAAAGAACT
genomic: CATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAAgttagtttga ... gattgggcagTTCTATTTGAAGCTTGAGGAAAAGACTCATGCGAAGGAAGTGGAAAGAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCCCTGAGGAAGGAGATGCTAAACCTCAACGAACAGGCCATCTTCCTGCATATGGCTTCAGTTTCAAGTGTGATGAGAGAGCTGAGAAACGAAAAGAAgttagtttgattcttatttgcacaaatttacattcattttgtgtttcagcttcacttgatcaaattcagggattttatttttttatttcttttttgattgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA