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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTCTTAGAGGTGTTAAAGTTGAAGTTACGCACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTGACATCACAACCTACAAGGGAACTAATgtactgatattttgtattttgccttcttttaattgtcctttttttttttttttaatcttttgaagtgagtttaagtggtggtttcttctcattccaacag

Basic information

species Vitis vinifera
transcript Vv11s0016g04620.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 6
AAGCTCTTAGAGGTGTTAAAGTTGAAGTTACGCACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTGACATCACAACCTACAAGGGAACTAATgtactgatattttgtattttgccttcttttaattgtcctttttttttttttttaatcttttgaagtgagtttaagtggtggtttcttctcattccaacag
| || || |||||||| |||||||||||||| || ||||||||| | |||||||| ||| | || ||||||||||| ||||| ||||||||||| || ||||| ||   ||||  | |||      ||  | || | | ||||     |      ||||||||| ||| |       ||   || | | ||||  |||||
AGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTTATgta-tgtcttttttaactttagaaggttgaacttttacattttacacatgccc--tcttttgaaatgatt-------gtctcttttccccattg-aacag

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G21450.1 (Glycine max), 5'ss of exon 7
AAGCTCTTAGAGGTGTTAAAGTTGAAGTTACGCACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTGACATCACAACCTACAAGGGAACTAATgtactgatattttgtattttgccttcttttaattgtcctttttttttttttttaa----tcttttgaagtgagtttaagtggtggtttcttctcattccaacag
| || || |||||||| |||||||||||||| || ||||||||| | |||||||| ||| | || ||||||||||| ||||| ||||||||||| ||| ||||         ||| ||||  |||    |   ||  |||||    |||    ||    || |||||| ||| |||   |  |  |||  || |  |  |||||
AGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTAGTgta---------tgtcttttaactttagctggctgaacttttacaatttacacaaatcctcctttgaaatgattttctcttctttttttctccccattgaacag

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G12850.1 (Glycine max), 5'ss of exon 6
AAGCTCTTAGAGGTGTTAAAGTTGAAGTTACGCACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTGACATCACAACCTACAAGGGAACTAATgtactgatattttgtattttgccttcttttaattgtcctttttttttttttttaat-cttttgaagtgagtttaagtggtggtttcttctcattccaacag
| ||  | |||||||| |||||||| ||||| || ||||||| | | |||||||| ||  ||||| ||||| |||||||||| ||||||||||| || | ||| ||   || |  ||||||| ||     ||| | |||   |||||||   ||   | | | |||       || || |  | |||| || | | |||||
AGGCCTTAAGAGGTGTGAAAGTTGAGGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATTACAGGATTGACATCACAGCCTACAAGGGAGCTTAAgta-tggctttgtaaattttgcattacaa-aatggacctcaatttttttagataggacctctcaag-------aaatgat--tctcttttcctcctaacag

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G08170.1 (Glycine max), 5'ss of exon 6
AAGCTCTTAGAGGTGTTAAAGTTGAAGTTACGCACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTGACATCACAACCTACAAGGGAACTAATgtactgatattttgtattttgccttcttttaattgtcctttttttttttttttaatcttttgaagtgagtttaagtggtggtttcttctcattccaacag
||||  | |||||||| ||||| |||||||| || ||||||| | | |||||||| ||  ||||| ||||| |||||||||| ||||||||||| || | ||| ||   || |  | ||||| ||     |      ||   ||||||   |    | | | |||       || | ||  | |||| || | | |||||
AAGCCTTAAGAGGTGTGAAAGTAGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATTACAGGATTGACATCACAGCCTACAAGGGAGCTTAGgta-tggctttgtaaactttgcattacaaaatgaactctaaattttttagatatgacctctcaag-------aaattgt--tctcttttcctcctaacag