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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACGCAAGCACATCTCGTGATAGCTTACTTGCGGCAGTTCGTGATGTGTTGCAAACAGAAgtaggtagatgggttctctcttggatatcaatttagcttttgaactcataatttgaatatcatttgtcacactcttgtgttctgtggtgatttaatctcataaaatgtgatgaccttttggtttgcctttttcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04420.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G12950.1 (Glycine max), 5'ss of exon 6
GTTTACGCAAGCACATCTCGTGATAGCTTACTTGCGGCAGTTCGTGATGTGTTGCAAACAGAAgtaggtagatgggttctctcttggatatcaatttagcttttgaactcataatttgaatatcatttgtcacactcttgtgttctgtggtgatttaatctcataaaatgtgatgaccttttggtttgcctttttcag
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GTTTATGCAAGCACATCTCGTGATAGCTTACTTGCAGCAGTTCGTGATGCTTTACAAACTGAAgtaggtagatgtatctcatcttggttgagaatt--gtttttaattgtatgtgtacattgaagcatggtgatttatttcctataatgcttgtctaatctcata---------------------------------

upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G08040.1 (Glycine max), 5'ss of exon 6
GTTTACGCAAGCACATCTCGTGATAGCTTACTTGCGGCAGTTCGTGATGTGTTGCAAACAGAAgtaggtagatgggttctctcttggatatcaatt-tagctt--ttgaactcataatttgaatatcatttgtcacactcttgtgttctgtggtgatttaatctcataaaatgtgatgaccttttggtttgcctttttcag
||||| |||||||| |||||||||||||||||||| |||||||||||||  || ||||| ||||||||||||||  |    |||||| |   |||| |   ||  ||| |    ||  |||||  |   |  | |   || | |  |   ||    | ||||||||||                                 
GTTTATGCAAGCACGTCTCGTGATAGCTTACTTGCAGCAGTTCGTGATGCTTTACAAACTGAAgtaggtagatgtatctcatcttggttgagaattgttatttagttgtatgtgtacattgaagcttgatgattatg-tcctataatacttg----tctaatctcata---------------------------------