Sequence
atgc intronic sequence ATGC exonic sequenceGTCAAATTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAGgtaaagatggtaccattttctcatttttcagatacatgcttgtgatttatatttgttctaattaatctattttcattaattggttgtgtcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G113640_T03 (Zea mays), 5'ss of exon 5
--GTCAAATTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAGgtaaagatggtaccattttctcatttttcagatacatgcttgtgatttatatttg---ttctaattaatctattttcattaattggttgtgtcag
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GCGTCCA--TGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccggtgcttgtttgcgactagcagtttcct-ttggaagatgatatttgacattttaagtgcccatttgctactgacag----------
upper sequence: Vv11s0016g03520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G34690.3 (Glycine max), 5'ss of exon 6
GTCAAATTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAGgtaaagatggtaccattttctcatttttcagatacatgcttgtgatttatatttgttctaattaatctattttcattaattggttgtgtcag
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GTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAAAAGGTGCAGATTTGGATTTTCTCTCCGTTGCTTTGAAGgtaagca--atagcat-----caaagcttatctataaatatatgattgatgggaattctaat--attaccttttgtcag-------------
upper sequence: Vv11s0016g03520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G28830.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCAAATTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAGgtaaagat--ggtaccattttctcatttttcagatacatgcttgtgatttatatttgttctaattaatctattttcattaattggttgtgtcag
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GCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcac-tcggttacat---gtttacattcgatgtttggctacg-cagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351029598|gb|FQ427438.1|FQ427438EST: GAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAG GTGGCTTCTCAAGCAGTTTATTCTTTGCATAAGAGCTCAACAAGAGAT
genomic: GAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAGgtaaagatgg ... gttgtgtcagGTGGCTTCTCAAGCAGTTTATTCTTTGCATAAGAGCTCAACAAGAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAAATTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAGgtaaagatggtaccattttctcatttttcagatacatgcttgtgatttatatttgttctaattaatctattttcattaattggttgtgtcag
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG