Sequence
atgc intronic sequence ATGC exonic sequenceGTTTGTGCTGGACTTTTAACCCGTCTTCAAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAGgtgaaacaccatgccaatttttcatttggggattaagtggaagtttcaattatacttgtacctgggacatgttaatgctattcaacgagtggtgttttactgattaatttctactttaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G055219_T01 (Zea mays), 5'ss of exon 6
GTTTGTGCTGGACTTTTAACCCGTCTTCAAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAGgtgaaacaccatgccaatttttcatttggggattaagtgga---agtttcaatta---tacttgtacctgggacatgttaatgctattcaacgagtggtgttttactgattaatttctactttaacag
|||||||||||||||| | |||| || ||||| | || ||||||||||||||| |||| |||||||| | |||||| | | || || |||| | ||| | | | | || | || | || | |||||| ||| | || |
GTTTGTGCTGGACTTTCATCCCGCCTCCAAGAGTATAAGTCTGAAAATGCACAGCTGGAGGAACTTCTTGTTCAAGAGgtctagttagttcacacacttatattttctgtttatctccacccaactgtaagcagttcttttttttctaatgtacattaatgttatacgacatgccag-----------------------------
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G08430.1 (Glycine max), 5'ss of exon 6
GTTTGTGCTGGACTTTTAACCCGTCTTCAAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAGgtgaaacaccatgccaatttttcatttggggattaagtggaagtttcaat-tatacttgtacctgggacatgttaatgctattcaacgagtggtgttttactgattaatttctactttaacag
|| ||||||||| | | | ||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |||||| | |||| || ||| ||| |||| ||| | ||| |||| | |||| || | |||| | | ||||||| | | || |||
GTCTGTGCTGGATTGTCATCCCGTCTTCAAGAATACAAATCTGAAAATGCACAGTTGGAGGAACTTCTCACTTCAGAGgtgaagcaccatcactatttcctgttaaaggaataaa---aagtctcattatatgcttgaaatgaaaacatattga--ctatc---------atatcacttaaattaattctaaatcta-cag
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G01230.1 (Glycine max), 5'ss of exon 8
GTTTGTGCTGGACTTTTAACCCGTCTTCAAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAGgtgaaacaccatgccaatttttcatttggggattaagtggaagtttcaat-tatacttgtacctgggacatgttaatgctattcaacgagtggtgttttactgattaatttctactttaacag
|| ||||||||| | | | ||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| || |||||| | |||| || ||| ||| | || ||| | ||| |||| | |||| || | |||| || | || |||| | | || |||
GTCTGTGCTGGATTGTCATCCCGTCTTCAAGAATACAAATCTGAAAATGCACAGTTGGAGGAACTTCTCACTTCAGAGgttaagcaccatcactatttcctgttaaaggaataaa---aggtctcattatatgcttgaaatgaaaacatattga--ctatc---------gtatcacttaaatcaattctaaatcta-cag
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G19950.2 (Arabidopsis thaliana), 5'ss of exon 6
GTTTGTGCTGGACTTTTAACCCGTCTTCAAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAGgtgaaacaccatgccaatttttcatttggggattaagtggaagtttcaattatacttgtacctgggacatgttaatgctattcaacgagtggtgttttactgattaatttctactttaacag
|||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||| || | || ||| | || | ||| | | | | | ||| || | | | ||| | || ||||| | || |||| || | ||| ||
GTTTGTGCTGGACTTTCGTCCCGTCTTCAAGAAATTAAAGCGGAAAATGCACAGTTGGAAGAGCTTCTCACTGCAGAGgtaaacttaaacagtttgagtttcttttgacccaaattagaaaa---agtaaaagtgatacttgaaggttttcagtgc-acctaa---------ttttatttcttcatttttattgtaatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77581293|gb|DV219578.1|DV219578EST: AAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAG AAAGAGCTTAGTAACTCATATGAGGCTCGCATAAAGCAACTACAGCAAGAT
genomic: AAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAGgtgaaacacc ... actttaacagAAAGAGCTTAGTAACTCATATGAGGCTCGCATAAAGCAACTACAGCAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTGTGCTGGACTTTTAACCCGTCTTCAAGAATGCAAATCTGAAAATGCACAGTTGGAAGAACTTCTCACTGCAGAGgtgaaacaccatgccaatttttcatttggggattaagtggaagtttcaattatacttgtacctgggacatgttaatgctattcaacgagtggtgttttactgattaatttctactttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG