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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCTATTAATCAAGCTCCATTAGTTAAGTTTGGTGGGCACAAGGACGAAGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTGgtactatcatgtagtatttttcacttatttattgagttgagttctttctgaagtatctgtaactttccgttatcaaaatagaccagtgttttgataatggtgtttctttccaaag

Basic information

species Vitis vinifera
transcript Vv11s0016g02270.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 7
---CCTGCTATTAATCAAGCTCCATTAGTTAAGTTTGGTGGGCACAAGGACGAAGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTGgtactatcatgtagtatttttcacttatttattgagttgagttctttctgaagtatctgtaactttccgttatcaaaatagaccagtgttttgataatggtgtttctttccaaag
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GCTGCAGTTTTTAATCAGGACCCATTGTATAAATTTAA---ACACAAAGATGAAGGTTATGCTATAGACTGGAGTCCTCTTGTTCCTGGAAAGCTTGCATCTGgtaatctttagttatatgtttttcagtttagctatgtt----ttcctctggcatgtctccatattta-gtgatcacag-atatatgaagcttgacaatgatcttcatttttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110369277|gb|EC933431.1|EC933431
EST:     AAAGCTTGTAACTG                         GGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACAT
genomic: AAAGCTTGTAACTGgtactatcat ... ctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACAT
EST: gi|351012692|gb|FQ430255.1|FQ430255
EST:     AGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTG                         GGGACTGCTAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACAT
genomic: AGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTGgtactatcat ... ctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACAT
EST: gi|349828396|gb|FQ417138.1|FQ417138
EST:     AAGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTG                         GGGACTGCAAGAACTGTATTTATTTATGGGAACCCACATCAGAT
genomic: AGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTGgtactatcat ... ctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGAT